Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3341 161 1e-34 seq3295 98.7 1e-15 >seq3341 Length=2704 Score = 161 bits (178), Expect = 1e-34 Identities = 393/589 (67%), Gaps = 15/589 (3%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || ||||| |||||||| || |||||||| | || | ||||| || | Sbjct 2079 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 2020 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | |||| |||||||| ||||||||||| |||||||| || || || ||| || || | Sbjct 2019 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCG 1960 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC------CGG 42230 | |||||||| || || || ||||| ||||| | || | ||| || ||| ||| Sbjct 1959 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCA-AACGCCGCGCGG 1901 Query 42231 CAC-TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 | | ||| | | |||||| ||||||| | ||||||||| | || ||||| || || Sbjct 1900 CGCGAGTC--GCA-CCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTC 1844 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || || || | || | ||| || || | || || | || || || || | Sbjct 1843 TCAATCGCGCGGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATAAGC 1784 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 || ||||| || || || ||||| || ||||| ||||| || |||||||| || | Sbjct 1783 AGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGC 1724 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTC 42467 ||||| | ||||| || || | | || ||||| || | || ||||| || || | Sbjct 1723 GCCTCCGGGACCTGCACCTCGCTGCTGAA--GTTCATGGCGAGGTTCTCGTTGACAATGC 1666 Query 42468 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA 42527 |||||||||| ||||| ||||| | || || || || || || |||| || | Sbjct 1665 CGTCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGA 1606 Query 42528 ATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 || ||||| || |||| || | | ||| | ||||| | ||||| || | Sbjct 1605 GGTTGTTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCTTCGGCGGTCCAGAAGCTCG 1546 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 | || ||||| || ||||| | ||| | || | | ||||| ||||| Sbjct 1545 CCTCGGCCTTCTTGTACATCTGCCACACTTCGTTCTCCTGAATCGGGAA 1497 >seq3295 Length=2747 Score = 98.7 bits (108), Expect = 1e-15 Identities = 403/633 (64%), Gaps = 2/633 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| || ||||| | || || ||||| | || | ||| Sbjct 1314 ACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCACGGGCGCGATGG 1373 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 |||||| || ||||| || || ||||||||| | | ||||| | ||||||||| Sbjct 1374 AGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATATCCGCGTGCCACGGT 1433 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| || || | ||| || ||| || ||||| || | ||| | || Sbjct 1434 TCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGCCACCCTGGTCCACGTAGCGCGCC 1493 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 |||| ||| | || | | ||| || | | || || || | || || || ||| | Sbjct 1494 GTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGTTTGACGAGCCGTTCGTGCCGCGG 1553 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || || |||||||||| ||| | | ||| || || || ||| || Sbjct 1554 ATGTACGAGTTGGTGGCACGAATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTC 1613 Query 72322 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 72381 ||||| | ||||| | || | ||| || ||||||||||| || || ||| ||||| Sbjct 1614 GAGATGCAAGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATG 1673 Query 72382 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 72441 ||| || || || |||| || |||| || ||||| ||||| | || || Sbjct 1674 GCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCGTGCCCGCGTTAAACAGCGTCGGC 1733 Query 72442 GAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTAT 72500 | |||||||| || | ||| |||| ||| | ||||||||| | || | || || Sbjct 1734 GTCGCGTGCGTGAAGAAGCTTTGCGACATGTA-CTCGTACGTCTCGAGCGCGGCGTCAAT 1792 Query 72501 ATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGAT 72560 || | || || || || ||||| || | | ||| ||||| || | || ||| Sbjct 1793 GTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGCGAC 1852 Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 |||| | | || || || || || || | || || || ||||| |||| ||| Sbjct 1853 CTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTA 1912 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||| || || |||| || || ||||||| Sbjct 1913 GTCAAAATCGCGGTCGTGGATGATCGCCGAATT 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671012077846280