Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3341 150 3e-31 seq152 143 4e-29 seq3295 111 2e-19 seq81 107 3e-18 >seq3341 Length=2704 Score = 150 bits (166), Expect = 3e-31 Identities = 580/888 (65%), Gaps = 50/888 (6%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTC 125080 ||| | |||||||| ||||| |||| ||| ||||| | ||||||| ||||||| || Sbjct 1521 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAAGAGATCGATCTTGTG 1580 Query 125081 CAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || | |||| | || ||| | | | | || || | ||||| | || || ||| Sbjct 1581 CACG-ACCTCAAGGACTGGAACAACC---TCACGGACAACGAGCGCTACTTCATCAAGCA 1636 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATT 125200 | | | || |||||||||| | || || || |||||||| || || | || || Sbjct 1637 CGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCAACGAGAACCTC--GCCATGAAC 1694 Query 125201 CTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 || || | | || | || |||| | ||||| ||||| ||||| ||| || Sbjct 1695 TTCAGCAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCTTCTACGGCTTCCAGATCGCCATC 1754 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---CG 125315 |||||| | ||||| || |||| || || ||||||| |||||| || | || Sbjct 1755 GAGAACATCCACTCTGAGGTGTATTCGCTGCTTATTGACACGTACATCAAGGACCAGACG 1814 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || ||| | ||| ||| || || || | || | | | || ||||| Sbjct 1815 GAGAAGAACCACCTTCTCCG---CGCGATTGAGACCATCCCTTGCGTGCAGAAGAAGGCC 1871 Query 125376 CAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 || |||| | |||| ||| | || | | | ||| || || | | || || Sbjct 1872 CACTGGGCTCTCAAGTGGTGCGACTCGCGCCGCG-CGGCGTTTGCGGAGCGCATTGTCGC 1930 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| ||||| |||||||||||||| |||||| |||| | ||||| ||||| || Sbjct 1931 CTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTTGCTCGATCTTCTGGCTTAA 1990 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || ||||||||||| || | | |||||| | || || || || ||||| Sbjct 1991 GAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGG 2050 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGT-TTCGCAACT-----ATCTGCGTCCCGAGT- 125607 ||| ||||| ||||| || || |||| ||| | || | || |||||||| Sbjct 2051 CCTCCACTGCGACTTCGCGTGCCTGCTGTACTCGAAGCTCGCCAACAAGCTTCCCGAGTC 2110 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 || ||||| || || ||||| | | || ||||| ||| || | | Sbjct 2111 GCGCATCCA-CG------AGATCATC--CGT-------GACGCCGTCTCGATCGAGAAGG 2154 Query 125668 AGTTTCTAACCGAATCCCTACCGG-TCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 |||| | || || || |||| | ||| | || |||||||||| || |||||| Sbjct 2155 AGTTCGTCCAGGACTCGCTCCCGGTTGAGC-TTATCGGCATGAACTCATCCCTCATGTGC 2213 Query 125727 GAGTACATAGAGTT-TGTGGCAGATCGTCTACTGTACGAG-TTGATTGGCCGCAAGATTT 125784 ||||||| ||||| ||| || || ||||| || ||| | ||| | | ||||| | Sbjct 2214 CAGTACATCGAGTTCTGT-GCGGACCGTCTTCTCCACGCGCTTGGCGTGTC-TAAGATCT 2271 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| | | ||| || || |||| ||| || || || || |||| |||||||||| Sbjct 2272 ACAAGGTCTCGAACCCGTTCGATTGGATGGACATGATCTCGCTCCAGGGAAAGACCAACT 2331 Query 125845 TTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACGGTGTCGGTGT 125890 | ||||||||| || ||||||| | || || |||||||||||| Sbjct 2332 TCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGC--CGGTGTCGGTGT 2377 >seq152 Length=41146 Score = 143 bits (158), Expect = 4e-29 Identities = 295/427 (69%), Gaps = 10/427 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || || || || || |||||||| ||||||||| | |||| ||| | ||||| ||| Sbjct 27117 GGAGACCTCGGACCGGTGTACGGCTTCCAGTGGCGCCACTTCGGCGCAAAGTACAC-GAC 27059 Query 70127 --TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAA-TTGCAGACAATCATTGACACT 70183 ||| | | ||||| | |||||||| || || || |||| || | ||| || Sbjct 27058 GATGCACGCC-GACTACACTGGTCAGGGCGTCGACCAGCTTGCCGAGG-TGATTCTCAAA 27001 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 || ||||| ||||| | || | | || | |||| ||||||| || || ||| | Sbjct 27000 CTGAAGACAAATCCGAACGACCGTCGCATAATCATGTCAGCATGGAACCCGGCCGATCTC 26941 Query 70244 CACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCA 70301 | |||||||||| || || || ||| |||| || ||||||||| ||| || || Sbjct 26940 AAGGAAATGGCACTGCCCCCCTGCCACATGTTCTGC-CAGTTTTACGTCGCG-GACGGTG 26883 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | |||| ||| ||||||||| | || |||||||| |||||||| ||||| |||| Sbjct 26882 AGCTGTCTTGCCAGATGTATCAGCGCTCAGCTGACATGGGTCTCGGTGTGCCCTTCAACA 26823 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || ||||| | | ||||||| |||| || || |||| || ||| ||| | Sbjct 26822 TCGCGAGCTACGCACTCTTGACGCGGCTGATCGCGCAGGTTACAGGACTGCGGGCGGGTG 26763 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGG 70481 | ||| | ||||||||||| ||||||||| | || | |||| ||||||| | |||| Sbjct 26762 ACTTCATTCACACCATTGGGGACGCTCACATTTACCTGGATCATGTCGAGCCCCTCAAGG 26703 Query 70482 TGCAACT 70488 | || || Sbjct 26702 TCCAGCT 26696 >seq3295 Length=2747 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || ||||| |||||| | ||| Sbjct 298 TACAAGACCGTGTGGGAGATCAAGCAGAAGGCCGTGCTGGACATGGCCGCCGACCGCGGT 239 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||| || ||| | || || || | ||||| || || ||| Sbjct 238 GCCTACATCTGCCAGAGCCAGTCGCTGAACGTGCACATCGCCGATCCAACGATCAGCAAG 179 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||| || Sbjct 178 CTCACGTCGATGCACTTCTACGCATGGAAGAAGGGCCTCAAGACCGGCATGTACTACCT 120 >seq81 Length=54637 Score = 107 bits (118), Expect = 3e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || ||||| |||||| | || Sbjct 9974 TACAAGACCGTGTGGGAGATCAAGCAGAAGGCCGTGCTGGACATGGCGGCCGACCGCGGC 10033 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||| || ||| | || || || | |||||||| || ||| Sbjct 10034 GCCTACATCTGCCAGAGCCAGTCGCTGAACGTGCACATCGCCGAGCCGACGATCAGCAAG 10093 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| || Sbjct 10094 CTCACGTCGATGCACTTCTACGCGTGGAAGAAGGGCCTCAAGACCGGCATGTACTACCT 10152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740918834124280