Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1283 192 9e-45 seq28 181 2e-41 seq1238 149 1e-31 >seq1283 Length=7778 Score = 192 bits (212), Expect = 9e-45 Identities = 199/261 (76%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || ||||||||||| || ||||| ||||| ||||| Sbjct 5497 CGCCAAGCGTCATCGCAAGGTTCTCCGCGATAACATCCAGGGTATCACGAAGCCCGCTAT 5556 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||||||||||||||| ||||||||| |||| || || |||| || |||| Sbjct 5557 CCGTCGTTTGGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 5616 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| ||||||| ||| || |||| ||| || | || || || Sbjct 5617 TCGTGGCGTGCTCAAGGTCTTCCTTGAGAATGTGATCCGTGACTCTGTTACGTACACGGA 5676 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| |||||||||||||| ||||||| |||| ||||| | || || || || Sbjct 5677 GCACGCTCGCCGTAAGACTGTCACGGCCATGGACGTCGTGTATGCCCTTAAGCGCCAGGG 5736 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | |||| ||||| || Sbjct 5737 TCGCACGCTTTACGGTTTCGG 5757 >seq28 Length=73975 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || ||||||||||| || || |||||||| || || Sbjct 64345 CGCCAAGCGTCATCGCAAGGTTCTCCGTGATAACATCCAGGGCATTACCAAGCCTGCCAT 64286 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||||||||| || ||||||||| |||||||| || |||| ||||| | Sbjct 64285 CCGCCGACTGGCTCGTCGTGGCGGCGTCAAGCGTATCTCTGGACTGATCTACGAAGAAAC 64226 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||| ||||||| ||| || || | ||| || || ||| ||||| Sbjct 64225 GCGTGGCGTCCTCAAGGTCTTCCTTGAGAATGTGATTCGCGATTCTGTCACCTACACCGA 64166 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| ||||| ||||||| |||| ||||| | || || || || Sbjct 64165 GCACGCTCGCCGCAAGACAGTCACTGCCATGGACGTCGTGTATGCTCTCAAGCGCCAGGG 64106 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || || || ||||| Sbjct 64105 TCGTACTCTTTACGGCTTCGGCGGTTAA 64078 >seq1238 Length=8058 Score = 149 bits (164), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 7762 CGCTAAGCGTCATCGCAAGGTC-CTTCGTGACAACATCCAGGGTATCACCAAGCCTGCCA 7704 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| |||||||||||||| ||||||||| |||| || || |||| || |||| Sbjct 7703 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGA 7644 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| ||| | | ||| || | Sbjct 7643 CGCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACTCGGTGACCTACACGG 7584 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || ||||| ||||| ||||||| Sbjct 7583 AGCACGCCCGCCGCAAGACGGTCACGGCCATGGA 7550 Score = 84.2 bits (92), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| || |||||||| || || |||||||| || || Sbjct 7470 CGCTAAGCGTCATCGCAAGGTTCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCCAT 7411 Query 16492 CCGTCGTCTGGCTCGTCGTGG 16512 || ||||| ||||||||||| Sbjct 7410 TCGCCGTCTCGCTCGTCGTGG 7390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061345506029