Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq272 165 2e-35 seq3341 113 1e-19 seq711 91.5 3e-13 >seq272 Length=27858 Score = 165 bits (182), Expect = 2e-35 Identities = 458/689 (66%), Gaps = 25/689 (4%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| || || || | Sbjct 24014 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATATCCAA 23955 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 23954 GTGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTG 23895 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| |||| || | || ||||| | || ||| || ||||| Sbjct 23894 CTTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGAGTCGA 23835 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || ||| || ||| | || | ||| ||||| | | || Sbjct 23834 CTTGCCGGCACCGTTGGGGCCAACAACAGCGATACGCGAGGCGAGCGAACAC--GTCA-- 23779 Query 333554 CAC-GTTGTCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT- 333608 ||| | | || ||| | || || || || |||| | || ||| ||| Sbjct 23778 CACTGATATCGCGGATCGACGGCTTGTCACGGCCAGGGTACTGGTACGT-ACAGTTCGTC 23720 Query 333609 AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || ||||| ||| || | ||| ||||| | | ||||| || ||||| ||| Sbjct 23719 AGACGAATGATCGGCTTACCCTTGTTCT---TGATATCGGCAAGGAAACCCGGCTCAGGG 23663 Query 333666 AACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 333722 ||| | || || | | | | ||| ||| ||||||| || | || || | Sbjct 23662 AACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTAGCCTCCGGCTTC 23606 Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 | ||| |||||||| || || || ||||||||| |||||||||| |||| ||||| Sbjct 23605 TGCTTGACGAACTCCGAAAGGTTACCCTTGTACGTCTTCAGCTTGCGGTTC---TCGTAG 23549 Query 333783 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 333842 ||||| || ||||| || | ||||||||| ||||||||||| ||||| || | || Sbjct 23548 TGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCGGAGTCGTGCGACACGATGAGCGAC 23489 Query 333843 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGA 333902 | |||| | | ||| | ||||||| || |||||| | ||||| ||| | Sbjct 23488 GTCACGTTCGTGAGGCTCGTCAGGTAGTCCTCGAGCCACTTGACGTTGTGGACATCCAAG 23429 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| || || || || | | || |||| |||||| ||||| || | Sbjct 23428 TGGTTCGTCGGCTCATCGAGCAGAAGAATATCAGCCTTCATGAGCATGGCACGGGCCAAC 23369 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | || ||||| ||||| || || ||||| Sbjct 23368 TCAAGCTTCATCTTCCAACCACCCGAAAG 23340 >seq3341 Length=2704 Score = 113 bits (124), Expect = 1e-19 Identities = 538/843 (64%), Gaps = 28/843 (3%) Strand=Plus/Plus Query 242897 TGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGT---TCCTC 242953 ||||| | ||||| |||||||| | ||| | ||| |||||| |||| || | || | Sbjct 1519 TGTGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACCGCCGAAGAGATCGATCTTG 1578 Query 242954 TGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCA 243013 || ||| || || |||||| | || |||| ||| |||| || | ||||||| Sbjct 1579 TGCACG---ACCTCAAGGACTGGAAC---AACCTCACGGACAACGAGCGCTACTTCATCA 1632 Query 243014 AACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACCA 243073 | ||| | || | || || || | | || || ||||| | || || || | | Sbjct 1633 AGCACGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCAACGAGAACCTCGCCATGA 1692 Query 243074 ACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 243133 |||| || || || ||| || ||||| || || || | | ||| | || Sbjct 1693 ACTTCAGCAGCGAGGTGCAGGTCCCGGAGGCGCGTTGCTTCTACGGCTTCCAGATCGCCA 1752 Query 243134 ACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGATGAAC 243193 ||| ||||| ||||| ||| | || ||||| ||| || || ||| | || | Sbjct 1753 TCGAGAACATCCACTCTGAGGTGTATTCGCTGCTTATTGACACG--TACATCA-AGGACC 1809 Query 243194 AA---GAGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGG 243250 | ||| ||| | ||| || ||| || || | ||| || || || || |||| Sbjct 1810 AGACGGAGAAGAACCACCTTCTCCGCGCGATTGAGACCATCCCTTGCGTGCAGAAGAAGG 1869 Query 243251 CAAAATGGGCTCAGAAGTGGCTAGAACC---CGGTAAATCATTTGCTGAGCGTCTCGTCG 243307 | | ||||||| |||||| || | | | | ||||| ||||| | |||| Sbjct 1870 CCCACTGGGCTCTCAAGTGGTGCGACTCGCGCCGCGCGGCGTTTGCGGAGCGCATTGTCG 1929 Query 243308 CCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGC 243367 ||| | | ||| || || || | || || || ||| ||| | ||||| ||||| Sbjct 1930 CCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTTGCTCGATCTTCTGGCTTA 1989 Query 243368 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 243427 ||| || | ||||| |||||| | | || |||||| ||||| || || |||| Sbjct 1990 AGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGG 2049 Query 243428 GCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC 243486 |||| ||| | |||| ||| || |||| || |||||| |||||||| || | Sbjct 2050 GCCTCCACTGCGACTTCGCGTGC-CTGCTGTACTCGAAGCTCGCCAACAAGCTTCC---C 2105 Query 243487 GAAACGGTCAAACAA---ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGC 243543 || || || || |||||| || || || | ||| ||||| ||| | Sbjct 2106 GAGTCGCGCATCCACGAGATCATCCGTGACGCCGTCTCGATCGAGAAGGAGTTCGTCCAG 2165 Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 ||| | | || |||||| ||||||||||| |||||| | ||||||||||| Sbjct 2166 GACTCGCTCCCGGTTGAGCTTATCGGCATGAACTCATCCCTCATGTGCCAGTACATCGAG 2225 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAA 243662 ||| || ||||| || || ||||||||| || ||| | ||||| | ||| Sbjct 2226 TTCTGTGCGGACCGTCTTCTCCACGCGCTTGG-CGTGTCTAAGATCTACAAGGTCTCGAA 2284 Query 243663 CCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCG 243722 ||| || | | ||||| | || ||||| || || || || ||||||||||| ||||| Sbjct 2285 CCCGTTCGATTGGATGGACATGATCTCGCTCCAGGGAAAGACCAACTTCTTCGAGAAGCG 2344 Query 243723 TGT 243725 ||| Sbjct 2345 TGT 2347 >seq711 Length=13416 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 297427 GTTC-AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCG 297485 |||| || || || ||||| || || | | ||| ||| |||||||| ||| | | Sbjct 1033 GTTCGAGGTTGGTAAAAATGTAACGAGGAGATGCGGCATCTTTACCACCGGACAACCGTG 974 Query 297486 AACCGAACTGGCCCTCCGGCAACAACCAGTTGA-TGTTATTGCTTCCGACATAATCCTGT 297544 |||||||||||| | || |||| || ||| |||| |||||||| || |||| ||| Sbjct 973 TACCGAACTGGCCGTTTGGAGACAAG-AGATGAATGTTGTTGCTTCCCACGAAATCTTGT 915 Query 297545 GCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCT 297604 || | ||| | |||||| || | |||| ||||||||| ||||| || ||||| Sbjct 914 GCCATGTTGATGATGGTGCCGTTCAGACTCTGTTCGCCATGATGATACGCTGAGTGCTCC 855 Query 297605 GCAACGTAACCGCTGAACTGTGCAACCTT 297633 | ||||| || || |||||||||||| Sbjct 854 GACACGTAGCCTGCGAGCTGTGCAACCTT 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102665878260550