Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq81 291 8e-74 seq3341 163 3e-35 seq2941 98.7 1e-15 seq200 96.9 3e-15 >seq81 Length=54637 Score = 291 bits (322), Expect = 8e-74 Identities = 1136/1755 (65%), Gaps = 37/1755 (2%) Strand=Plus/Minus Query 152722 TGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAG 152781 |||| | || |||||||| || |||||||| ||||| ||| ||| ||||| | Sbjct 10157 TGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCATCGACG 10098 Query 152782 TCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGA 152841 | | | | |||||| | || | | || || | ||| |||||||| ||| Sbjct 10097 TGAGCTTGCTGATCGTCGGCTCGGCGATGTGCACGTTCAGCGACTGGCTCTGGCAGATGT 10038 Query 152842 AAGCGTTACGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGCGGTT 152900 | ||| |||||||||||||| || | || | | || ||| || |||||||| |||| Sbjct 10037 AGGCGCCGCGGTCGGCCGCCATGTCCAGCACGGCCTTCTGC-TTGATCTCCCACACGGTC 9979 Query 152901 TTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTG- 152959 |||||| | || || || || || | | |||||| | ||||| | || Sbjct 9978 TTGTACTTCTCCTTGACCGCGTCGGGGATCGCGCGCACGTTCTGCACCGAGCCGTGGTCA 9919 Query 152960 TGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGAT 153019 |||| || | ||| || | |||||||| | | | || | ||||| || | || Sbjct 9918 TGCAGAATCTG-GTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCAT 9860 Query 153020 CAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCT 153079 | ||||| ||| || | ||||||||| || | ||| || | || | ||| | Sbjct 9859 GAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGT 9800 Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 ||||| || || | || ||||| ||||| || || || || || | || || ||||| Sbjct 9799 CGTGAACGGCTCGATCGACTCGTTGTTGCCGAGAATCTGCGCGGTCGACGCCGTTGGCAT 9740 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCT 153198 | ||| | || || || || |||| ||||| | ||| || | | |||| | |||| Sbjct 9739 GGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGG-CCTTGAGCGCCG 9681 Query 153199 GCCAATCCCACAGCGCCGACG---GTGTCGCGTTCCACATGTCGTACTGTAACACTCCTC 153255 ||| ||||| || |||||| |||| || ||||||||||||||| || | || Sbjct 9680 CCCAGTCCCAGAGGCCCGACGTCGGTGTGACGCCCCACATGTCGTACTGGAAGATGCCCT 9621 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCAG 153314 || | || ||| || | | || ||||| | | |||| | || || | Sbjct 9620 TGCTCACCGGGGAGCCCTCATAGCTGGCATACGGGCCGTGCTCCTTGG-CGAGCTCCATG 9562 Query 153315 CTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCT 153374 ||||| | ||| || |||| | || ||| ||| | || ||||| || || Sbjct 9561 GACGCCTCCATCGCACCGAAGTACAGAGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCC 9502 Query 153375 TCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCG 153434 || ||||||||| ||| || || || | || |||||||| |||||||| | |||| Sbjct 9501 TCGTCGCTCTCGAACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGACCCTGCACACCG 9442 Query 153435 ACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATT 153493 | |||||| || || || | |||||||||| ||| ||| | ||||| |||| || Sbjct 9441 ATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCCGGGATGGGGTAGTAGTT 9383 Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553 | ||||| | ||||| ||||||||| ||| || || || || | | || |||| Sbjct 9382 GATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACCTTGGTGATGTCGTAGAGCTTCTT 9323 Query 153554 GAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATT 153613 || ||| | ||| | |||||| | | | | || || || || ||||| || || Sbjct 9322 AAAGTCAAACGTCTTGTCGTCGTT-CACAAACTTGGA--CAGCGCGATGGACGCGAGGTT 9266 Query 153614 ACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGC 153672 || ||||| ||| || |||| || |||||| | | |||| ||| |||||||| Sbjct 9265 GCACACGGCGACCTCGTCCGGCGACG-TGTACTCGAGCACCTCGCAGCAAAGGTTGCTCG 9207 Query 153673 ATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCA 153732 | || ||| | || ||||| || ||||| ||||||| ||| ||| | |||| Sbjct 9206 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCA 9147 Query 153733 TGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCG 153789 ||||||| ||| ||||||| || | |||| ||| |||| || | ||||| Sbjct 9146 TGTACGGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAACC---AGAGCTGCTGCG 9090 Query 153790 CTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACT 153849 | || | | || || ||||||||| ||||||| | | |||||| ||| |||| Sbjct 9089 CGCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGCGCCTCGAACT 9030 Query 153850 CGTCGCCGTA-GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATA 153908 ||||||| | | || | ||| || || || | ||| || | || |||| Sbjct 9029 CGTCGCCCCACGTCGT-GTAGAGCCCCGGGGCCTCGTTCGGGCAGAAGAGGCTCCACTCG 8971 Query 153909 TCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCG 153968 ||| ||| | |||||| |||||| |||||||| | ||| | ||||| | || ||| Sbjct 8970 CCGTTGGCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCGTAGAACAGATCG 8911 Query 153969 C--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGT-TTCAGATTGA-GCACGCTATAGAT 154024 | || | || | || || || || | | | || || | || | || | | |||| Sbjct 8910 CGAGCACGATGGA--GCT-CGTTTCCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AGAT 8855 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---TCCGCCCTG 154081 ||| |||||||| || || | ||| | ||| | | || || ||||| |||||||| Sbjct 8854 GTCCGCGTGCCACGGCTCGAGGTACATGGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTG 8795 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGT 154141 || |||| |||| || | | |||||| ||||| | ||| || | |||||| | | | Sbjct 8794 GTCCACGTAGCGCGCCGTGTCGTTGAACACGCGGAGCATCGGCACGAGGCCGTTCGACGA 8735 Query 154142 GCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAAT 154201 |||||| || ||| | | | |||||| | | |||||| | || || || Sbjct 8734 GCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCGCGGATGTTGTGCACGCTCACACCGAT 8675 Query 154202 GCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 ||||||| | |||| || ||| ||||| | ||||| ||||||||| ||||| Sbjct 8674 GCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGAT 8615 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 ||||| | | | |||| ||| || || ||| ||||| |||| || || Sbjct 8614 CGAGTCGTCCTTCATGGCCAGCAGGAAGCAAGACGACAGCTGCGGGCGCGGCGTGCCAGC 8555 Query 154322 CGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTC 154381 ||| || || || |||||||||| || | |||| ||| |||||| || Sbjct 8554 GTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTC 8495 Query 154382 GATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTG 154441 || ||| | || || || | ||| ||||||| |||||||| | | ||| ||||| Sbjct 8494 GAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCATCTGCTG 8435 Query 154442 CGGACGTTCGGCGAC 154456 ||| || || ||||| Sbjct 8434 CGGGCGCTCCGCGAC 8420 >seq3341 Length=2704 Score = 163 bits (180), Expect = 3e-35 Identities = 497/753 (66%), Gaps = 19/753 (3%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||||| || |||||||||||| | |||||||| |||||| || |||| || | Sbjct 1615 ACGAGCGCTACTTCATCAAGCACGTGCTCGCGTTCTTTGCCGCCAGTGACGGCATTGTCA 1674 Query 52153 ACATTAACCTCATCGAGTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || |||||| | | || | |||||| | || | || | ||||||| | ||| Sbjct 1675 ACGAGAACCTCGCCATGAACTTCAGCAGCG--AGGTGCAGGTCCCGGAGGCGCGTTGCTT 1732 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 || || || | ||||||| | | ||| | ||| |||| ||||| ||||| Sbjct 1733 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGGTGTATTCGCTGCTTATTGA 1792 Query 52271 GCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGCC 52330 | || || || || ||| || || || ||| | ||| | | || Sbjct 1793 CACGTACATCAAGGACCAGACGGAGAAGAACCACCTTCTCCGCGCGATTGAGACCATCCC 1852 Query 52331 GTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCACGC 52389 ||||| | || ||||| || ||||| | |||||| ||| ||| | | || || Sbjct 1853 TTGCGTGCAGAAGAAGGCCCACTGGGCTCTCAAGTGGTGCGACTCGCGCCGC-GCGGCGT 1911 Query 52390 TGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTG 52449 | || |||||||| || |||||||| ||||||||| | || || || || ||| Sbjct 1912 TTGCGGAGCGCATTGTCGCCTTCGCGGCCGTCGAGGGCATCTTCTTCTCGGGTTCTTTTT 1971 Query 52450 CCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGT 52509 | | ||||| | |||| | | ||| | ||||||||||| | ||| |||||| Sbjct 1972 GCTCGATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCCGGCCTCAGCTTCTCGAACGAGC 2031 Query 52510 TGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCG 52569 | || ||||| || || || || ||| ||||| |||||||| ||| || || || Sbjct 2032 TCATCTCGCGTGATGAGGGCCTCCACTGCGACTTCGCGTGCCTGCTGTACTCGAAGCTCG 2091 Query 52570 TGACCGAAAAATTG--GATTCGGACACGATCCT-GAGCATGTTCAAGGAGGCGGTGGCTA 52626 | | || || || ||| || ||| ||| || || || || || | | Sbjct 2092 CCAAC--AAGCTTCCCGAGTCGCGCA---TCCACGAG-ATCATCCGTGACGCCGTCTCGA 2145 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 |||| |||||||| | || | |||| ||||| ||||| | ||||||||| | Sbjct 2146 TCGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTTGAGCTTATCGGCATGAACTCATCCC 2205 Query 52687 CCATGTGCGAGTACATCGAGTT-TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA 52745 ||||||| ||||||||||||| |||| |||| ||||| | ||| || | | Sbjct 2206 TCATGTGCCAGTACATCGAGTTCTGTG-CGGACCGTCTTCTCCACGCGCTTGGCGTGTCT 2264 Query 52746 AAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| || ||| | |||| || ||||| || | ||| ||| || ||||| |||| || Sbjct 2265 AAGATCTACAAGGTCTCG-AACCCGTTCGATTGGATGGACATGATCTCGCTCCAGGGAAA 2323 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| ||||||||||| || |||||||| Sbjct 2324 GACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 2356 >seq2941 Length=3149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||||||| || || |||| | Sbjct 3034 GACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCA 2975 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| || || || || | Sbjct 2974 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 2915 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| || | ||| | ||| || || ||||| || || Sbjct 2914 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 2855 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2854 ACGAAGATCTGCAT 2841 >seq200 Length=35225 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || |||| Sbjct 30912 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 30971 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || |||||||| || || || ||||| ||| || || || | | Sbjct 30972 AAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACA 31031 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | | || | | ||| || |||| ||| | ||| || || |||||||| || Sbjct 31032 TTG-TCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTT 31090 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 31091 GACGAAGATCTGCAT 31105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496168401698160