Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3341 237 2e-57 seq200 125 7e-24 seq2941 122 9e-23 seq420 82.4 8e-11 >seq3341 Length=2704 Score = 237 bits (262), Expect = 2e-57 Identities = 397/566 (70%), Gaps = 10/566 (2%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||| || |||||||| || | |||||| || | || ||||| ||||| || Sbjct 2079 ACAGCAGGCACGCGAAGTCGCAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGA 2020 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||||||||||||||| || || || ||||| || || | | ||| |||| Sbjct 2019 AGCTGAGGCCGGGCATGAGGCCACGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCG 1960 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| |||||||||||||||||| || || | |||||| | |||| || | Sbjct 1959 AGAAGAAGATGCCCTCGACGGCCGCGAAGGCGACAATGCGCTCCGCAAACGCCGCG-CGG 1901 Query 133067 TGCTGG-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || | || ||| || ||||| | |||||| | | ||||| || || || || Sbjct 1900 CGCGAGTCGCACCACTTGAGAGCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTCTCA 1841 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGA--GGAACGC-ACGTAGGTGTCGATGAGG 133182 || ||| | | || | |||| |||| || | | ||| ||||| || || Sbjct 1840 ATCGCGCGGAGAA---GGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTGTCAATAAGC 1784 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 |||||||| || ||||| | |||||| |||||||| || |||||||| ||||| ||| Sbjct 1783 AGCGAATACACCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAACGC 1724 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| |||||||| || ||| | | | || || |||||||| |||||| Sbjct 1723 GCCTCCGGGACCTGCACCTCGCTGCTGAAGTTCATGGCGAGGTTCTCGTTGACAATGCCG 1664 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 || |||||||| || || || ||||||||||||||||| | |||||||||||| | | | Sbjct 1663 TCACTGGCGGCAAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGAGG 1604 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 | |||||| | | | | || || || || | ||| ||| ||||||| || ||| Sbjct 1603 TTGTTCCAGTC-CTTGAGGTCGTGCACAAGATCGATCTCTTCGGCGGTCCAGAAGCTCGC 1545 Query 133422 CTCGGCTTTTTTGTACATACTCCACA 133447 |||||| || |||||||| ||||| Sbjct 1544 CTCGGCCTTCTTGTACATCTGCCACA 1519 >seq200 Length=35225 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| || ||||| ||||||||||| | Sbjct 31109 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 31050 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || ||| | | | | || | || |||| ||||| ||||| || || | || Sbjct 31049 TTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 30990 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 30989 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 30930 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||||||| || ||||||| || Sbjct 30929 CAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCG 30891 >seq2941 Length=3149 Score = 122 bits (134), Expect = 9e-23 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || ||||| | ||||| ||| | | Sbjct 2841 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 2900 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 ||| | | |||| | || | || || | ||||| ||||| || ||||||| ||| Sbjct 2901 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGCAT-CCCGCCGGACC 2958 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| ||||| || |||| ||||| || ||||||| Sbjct 2959 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACA 3018 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| |||||||||| ||||||||||| Sbjct 3019 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGT 3056 >seq420 Length=20579 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | || || ||||| || || | ||| ||||| ||||| || || | ||| Sbjct 5082 GGAATTCCTCCGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGC 5141 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||| |||||||||||||| ||||| |||||||||| | ||||| || Sbjct 5142 ACGCTCTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCG 5194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500078061019520