Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3295 230 3e-55 seq55 125 8e-24 seq3341 116 4e-21 seq711 82.4 9e-11 >seq3295 Length=2747 Score = 230 bits (254), Expect = 3e-55 Identities = 766/1178 (65%), Gaps = 28/1178 (2%) Strand=Plus/Plus Query 110058 GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTG 110117 ||| | ||| | || ||||| ||| | || ||||||||| | || || |||||||| Sbjct 764 GCGTGCCTCGTTACTCTCGAACGGATGGCCCATGAGAATAAACGCGTCGGCGAGACCCTG 823 Query 110118 AACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG-TCGAGCAGTTTCTACGGGGT 110176 ||||| | || || ||||| || |||||| ||| ||| || | | |||| Sbjct 824 CACACCAATGCCGATCGGGCGGTGGCGCATGTTGCTGCGCTCG-GCCTCTGGGATTGGGT 882 Query 110177 AAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGA 110236 | ||||| |||||||||| || | || |||||| ||| ||||| || | || Sbjct 883 AGTAGTTGATGTCGATGACCTTGTTCAAGTTGCGCGTCACGACCTTGGTGATGTCGTAGA 942 Query 110237 GTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACG 110296 | || | | | || |||||||| || | || ||| | |||| || || || |||| Sbjct 943 GCTTCTTGAAGTCAAACGTTTTG---TCGTCGTTCACAAACTTGGACAGCGCGATGGACG 999 Query 110297 CAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAA 110354 | || |||||||| | |||||| | || ||||| || | | || || | Sbjct 1000 CGAGGTTGCACACGGCGACCTCGTCG--GGCGACGTGTACTCGAGCACCTCGCAGCAAAG 1057 Query 110355 GTTG---GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATC 110411 |||| || | | || || | ||||| ||| ||||| ||| |||||| | || Sbjct 1058 GTTGCTCGAGCGGATCGTG---CCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTC 1114 Query 110412 CTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATAC 110471 ||| || ||||||||||| || || || || ||||||||| ||| || || ||| | Sbjct 1115 CTTGTACAGCATGTATGGCGTGCCCGTCTCGATCTGTGACTCGAGGATCGCGAACCAGAG 1174 Query 110472 ATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | ||| ||| | ||||| ||| | || |||| |||||||| | ||||| Sbjct 1175 CTGCTGTGCGCGGATCGTCTTGCG--CGCGCGGCCCTCCTTCTCGTACTGGTGGTACAGC 1232 Query 110530 TCCTCAAATTCCTGTCCGTACACATC--AGAAAGACCCTTCGCCTTGTCGGGACAGAAGA 110587 |||| || || ||| ||| || | |||||| |||| || ||| ||||||| Sbjct 1233 GCCTCGAACTC--GTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTGGGGCAGAAGA 1290 Query 110588 GGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG 110647 || ||| | || |||| || | ||||||||| || || || |||||||| || Sbjct 1291 GGCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATGGCGT 1350 Query 110648 AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGT 110707 |||| || |||||| ||| || | ||| ||||| || || | || | Sbjct 1351 AGAACAGATCACGGGCGCGATGGAGCTCGTTACCGTGGTTCTTCTTGAGGTCGAGGAACT 1410 Query 110708 CCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGAC 110764 | | |||||||| |||||| |||||||| || | |||| || ||||| || | | Sbjct 1411 CGAAGATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACGAGCCCTTTCGCTTGCCGC 1470 Query 110765 CCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCAT 110824 | |||||| || ||||| || ||| | || || || | |||||| || | | || | Sbjct 1471 CACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGAGCATCGGCACGAGGCCGT 1530 Query 110825 CGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCA 110884 || || || || || | || || || |||||||||||| ||| | || Sbjct 1531 TTGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCACGAATGTTGTGCACGCTCA 1590 Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATAC 110944 ||| || || || |||||||| || || |||| | || || | || || | Sbjct 1591 CACCGATGCCGCCGGCCCACTTCGAGATGCAAGCGCACTGCTTCAGCGTGTCGTAGATGC 1650 Query 110945 CATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCG 111004 | || ||||| || |||| |||||| || |||||||| |||| ||| ||||| |||| Sbjct 1651 CCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGACGACAGCTGCGGACGCGGCG 1710 Query 111005 TTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGT 111064 | ||||| || || || || || ||||| || |||| | | ||| ||||| | | || Sbjct 1711 TGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGT 1770 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | || ||||| |||| | | || | ||| || || | || || || | | || Sbjct 1771 ACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACAGCGACGCGGAGAATCA 1830 Query 111125 TATATTG-AGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGG 111183 | | || |||| | || | ||| ||| | || ||| | || || |||||| || Sbjct 1831 TCTGCTGCGGGCGCTCCG-CGACCTTGCCACCGACGCGCAGCAGATACGACTTCTCGAGC 1889 Query 111184 GTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 ||||||| |||||||| | | || ||||| || || Sbjct 1890 GTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCGCGGTC 1927 >seq55 Length=62701 Score = 125 bits (138), Expect = 8e-24 Identities = 315/474 (66%), Gaps = 31/474 (7%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||||| || || | || | || || || || |||||||| Sbjct 41652 AATCTGGCGATCGAAACGACCTGGACGAAGAATCGCCTTGTCGAGGATGTCTACACGGTT 41593 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| | || | || || | ||| |||| | || ||||||||||||||| ||| Sbjct 41592 GGTACCAGCCAGCACAACCACGCC---CTCACTCGAGTTGAAACCGTCCATTTCCACGAG 41536 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC---CGAACG 11669 || ||||| | || | || |||||||||||| ||||| | || | Sbjct 41535 CAGTTGGTTCAGTGTGTTCTCTCGCTCATCGTTG---------CCACCCGAAAACGTTCC 41485 Query 11670 CTTCTTAC---------CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTT 11720 ||| ||| ||||||| || || ||||||||||| || || || || ||| Sbjct 41484 CTTGCTACGTGCGCGCGCGACAGCATCGATTTCATCGATGAAGACAATGCATGGAGAGTT 41425 Query 11721 GGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTC 11780 ||||| || | ||| | ||||| |||||| | || || || ||||||||||| Sbjct 41424 AGCACGAGCTTCACGGAACAAATCACGCACACGCGATGGGCCGACGCCAACGAACATCTC 41365 Query 11781 AACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTC 11839 || || | | | || | |||||| ||| || ||| | | |||||||| |||| Sbjct 41364 AATAAAATCGGAACCCGAGATACTGAA-GAACGGCACACTGGCTTCACCAGCCGTGGCCT 41306 Query 11840 GAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCT 11899 || ||||| |||||||| ||||| || | ||| | || | || || || |||| Sbjct 41305 TCGCAAGGAGCGTCTTACCAGTACCGGGAGGTCCAACAAGCAATGCACCCTTCGGAATCT 41246 Query 11900 TGGCACCACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 ||||||| || | | ||| || || ||| ||||||||| || | |||| Sbjct 41245 TGGCACCCAGATCAGTGAACCGCTTCTGGTTTC-GGAGGAAGTCGACGAACTCC 41193 >seq3341 Length=2704 Score = 116 bits (128), Expect = 4e-21 Identities = 173/245 (71%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || ||||| || || |||||||| || Sbjct 2056 TGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCGGGCATGAGGCCA 1997 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | |||||| || || |||||||||||||| || Sbjct 1996 CGCTTCTTAAGCCAGAAGATCGAGCAAAAAGAACCCGAGAAGAAGATGCCCTCGACGGCC 1937 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTCGAACCACTTGAGA 119681 ||||| |||| | ||||| ||||| | | || || |||| ||||||||||| Sbjct 1936 GCGAAGGCGACAATGCGCTCCGCAAACGCCGCGCGGCGCGA---GTCGCACCACTTGAGA 1880 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||||| |||||| || | ||| |||| || | || || || ||| || ||| Sbjct 1879 GCCCAGTGGGCCTTCTTCTGCACGCAAGGGATGGTCTCAATCGCGCGGAGAAGGTGGTTC 1820 Query 119742 TTTTC 119746 || || Sbjct 1819 TTCTC 1815 >seq711 Length=13416 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 168205 ATCTTAAGAAGACTCGGCCAAAAGTAATGAATCATATTGAGAATGAGACCCTTGATATGG 168264 ||||| || ||| |||||||||| |||||| | |||| | ||||||||||| ||| Sbjct 210 ATCTTCAGTAGAGATGGCCAAAAGTGATGAATGAAGTTGATCACTAGACCCTTGATGTGG 151 Query 168265 CTTCCATCATTATCTGCGTCTGTCATGATCATGAGACGACCATAACGAAG 168314 || ||||||| || |||| ||||||||| ||| | ||||| ||||| Sbjct 150 CTGCCATCATGGTCCTGATCTGCCATGATCATCAGATGCCCATATCGAAG 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588864440583400