Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq541 111 5e-19 seq272 96.9 1e-14 seq13329 84.2 6e-11 seq242 84.2 6e-11 >seq541 Length=16667 Score = 111 bits (122), Expect = 5e-19 Identities = 190/272 (70%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 |||||| ||||| | |||||| || || ||||||||| || ||| || || ||||| Sbjct 13925 TTCCATTGCCTTGACAAGACGACGTTGGATGTAACCAGTTTCAGCTGTCTTGACGGCTGT 13984 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA--GC 302691 |||||| | ||| ||||||||||||| || || ||||| | ||||| || |||| || Sbjct 13985 ATCAATCAAACCTTCACGACCACCCATGGCGTGAAAGAAGAACTCTTGTGG-CGTAAGGC 14043 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || || || ||| | || || || || || || || ||| ||| | Sbjct 14044 CCTTCAGGTAA-GAGTTTTCGACAAATCCTCGACTTTCTGGACCTAGGTCATCTTTGCCA 14102 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 |||| ||||| || | | | |||||||||||||||||||| |||||||| ||| Sbjct 14103 TAGTGAGGCAGAGTACGACGGTTGAAACCGTATGGGATACGCTTTCCTTCAACGTTTTGC 14162 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | ||| | ||| ||||| || || || Sbjct 14163 TGACCGACGCATGCAATAATCTGGGAGATGTT 14194 >seq272 Length=27858 Score = 96.9 bits (106), Expect = 1e-14 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | ||||| ||||||||||||||||| |||||| | || || || || || Sbjct 24500 CTTGATAGCCGAAGCGAGGGCACCAAGCGAGTCACGATCGAGGTAGTTCGTCGGCTCATC 24441 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 | || ||| | |||||| | || |||||| || || || || || ||||| |||||||| Sbjct 24440 CATGACAAGGATGTGCGGGTTCAGCCACATGGCAGCGGCAAGGACGACCTTGACCTTCTG 24381 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | |||| ||| | Sbjct 24380 ACCACCCGACAGACCACGCATGCGCGAGTGCGTACCGAACTCGGCACCAAGACCGAAGTT 24321 Query 354183 GTCGAGATGTTTCTGTAC 354200 ||| || || ||||| || Sbjct 24320 GTCAAGGTGCTTCTGGAC 24303 >seq13329 Length=363 Score = 84.2 bits (92), Expect = 6e-11 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 409298 CTCC-ATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGTTCGAAA 409356 |||| |||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| Sbjct 89 CTCCTATAGCTCAGTTGGT-AGAGCGTGTGGCTGTTAACCGCAAGGTCGCCGGTTCGAAC 31 Query 409357 CCGGTTGG 409364 |||| ||| Sbjct 30 CCGGCTGG 23 Score = 84.2 bits (92), Expect = 6e-11 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 409107 CTCC-ATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGTTCGAAA 409165 |||| |||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| Sbjct 89 CTCCTATAGCTCAGTTGGT-AGAGCGTGTGGCTGTTAACCGCAAGGTCGCCGGTTCGAAC 31 Query 409166 CCGGTTGG 409173 |||| ||| Sbjct 30 CCGGCTGG 23 >seq242 Length=30371 Score = 84.2 bits (92), Expect = 6e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGA-TGCGTCATATAG 251462 ||||| | ||||| | | |||||| || |||| ||| || || || | || | || Sbjct 29146 GCGATGATGCCACAGATGTCACACACGTGAACGCGGTAGGCGTCCGAGTTCGCGAACAAG 29087 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 | | || | | |||| | || || || || || | |||||| |||||||| || || Sbjct 29086 CGGTCCATAAG-GAAGTTGGCTGAGCCATGCGAGATGAGACAATCGCGCTCCATCTCTCC 29028 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| || ||||| | ||| || ||||| || || | | || Sbjct 29027 CATACGCAGACCACCTTCTCGAGCACGACCTTCCATGGGCTGGCGTGTCAACATCGTCAC 28968 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||||| ||||| || ||| || | ||||||||||| | ||||||||||| Sbjct 28967 AGGACCGCGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTCAAGCGCTGGTAGAA 28908 Query 251643 TGCGGGACCGATGAAGAT 251660 | || ||||||||||| Sbjct 28907 CGTTGGGCCGATGAAGAT 28890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471531849832561