Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq81 232 6e-56 seq3295 176 4e-39 seq200 111 1e-19 seq2941 107 2e-18 >seq81 Length=54637 Score = 232 bits (256), Expect = 6e-56 Identities = 1005/1556 (65%), Gaps = 70/1556 (4%) Strand=Plus/Minus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || || || || |||| | || | ||| || ||||| | || || || ||| Sbjct 9867 TCCTTCATGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTAC 9808 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| | ||||| ||||| | ||| |||||||| || |||||||| || || | ||| Sbjct 9807 ATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGAATCTGCGCGGTCGACGCC 9748 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 || |||||| ||| | || || || || || | |||| |||||| | ||||| Sbjct 9747 GTTGGCATGGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCTTGACGCTGGCCTTG 9688 Query 138664 AGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720 |||| || ||||||||| | | | ||| | | |||||| |||||||| || Sbjct 9687 AGCGCCGCCCAGTCCCAGAGGCCCGACGTCGGTGTGACGCCCCACATGTCGTACTGGAAG 9628 Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACA--CCAAACTCTTGCGCCA 138778 || ||| || | || ||| || || | | |||| || ||| | || | Sbjct 9627 ATGCCCTTGCTCACCGGGGAGCCCTCATAGC--TGGCATACGGGCCGTGCTCCTTGGCGA 9570 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 ||| || |||||| | |||||| |||| | ||| ||| || | || |||||| Sbjct 9569 GCTCCATGGACGCCTCCATCGCACCGAAGTACAGAGTCTCGAAGATGTTCTTGTTGAGCT 9510 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 ||||||||| |||||||| ||| || | | ||||||||||||| || || | Sbjct 9509 CGCGGGCCTCGTCGCTCTCGAACGCGTGGCCCATGAGAATGAACGCGTCGGCGAGACCCT 9450 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATT--TGACGCTTTTGCGGCTTC---GAT 138953 |||| || | |||| ||||| |||||||| || || |||| |||| || ||| Sbjct 9449 GCACACCGATGCCGATCGGGCGGTGGCGCAGGTTGCTG-CGCT----CGGCCTCCGGGAT 9395 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013 || || ||||| | ||||||| ||||| | || ||| || ||||| || | | Sbjct 9394 GGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTCACGACCTTGGTGATGT- 9336 Query 139014 CTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 | | | | | | ||| || | || ||||||||| || ||||| ||| Sbjct 9335 CGTAGAGCTTCTTAAAGTCAAACGTC------TTGTCGTCGT-----TC-ACAAACTTG- 9289 Query 139073 TGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGA 139129 |||| || || || | ||||||||| || || ||||| || | || |||| |||| Sbjct 9288 -GACAGCGCGATGGACGCGAGGTTGCACACGGCGACCTCGTCCGGCGACG-TGTACTCGA 9231 Query 139130 CAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTC 139189 | ||| || | || || | |||||| || | || || || || || | Sbjct 9230 GCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGC 9171 Query 139190 GGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAA 139249 |||| || | || ||||| ||||| ||||| ||||| || || | || | ||| | | Sbjct 9170 GGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGAGACTCGAGGA 9111 Query 139250 TGAATTTGAACAAGTCC--CTA-GCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGC 139302 | |||| || | || || | || ||| ||| || | | || | Sbjct 9110 TCGC---GAACCAGAGCTGCTGCGCGCGGATCGTCTTG-CGCGCGC---GGCCCTCCTTC 9058 Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGC--GA 139359 ||||||| | ||| || | ||||| |||| | || | |||| ||| | | | Sbjct 9057 TCGTACTGGTGGTACAGCGCCTCGAACTCGT-CGCCCCA--CGTCGTGTAGAGCCCCGGG 9001 Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419 || || || || | ||| ||| ||||||| |||| ||||||| ||||||| ||| Sbjct 9000 GCCTCGTTCGGGCAGAAGAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGA 8941 Query 139420 TCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTT 139478 ||||| ||||||| ||| | | || |||||| || | | || || || || | Sbjct 8940 TCCGGGATCCACATGGCGTAGAACAGATCGCGAGCACGATGGAGCT--CGTTTCCGTGGT 8883 Query 139479 ACGT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 | | || | || ||||| || || | ||| |||||||| || || || || ||||| | Sbjct 8882 TCTTCTTGAGGTCGAGGAACTCGAAGATGTCCGCGTGCCACGGCTCGAGGTACATGGCGA 8823 Query 139538 TTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGC 139594 | ||| || || ||||| || || || |||| || | | | ||||| |||| Sbjct 8822 ACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAACACGC 8763 Query 139595 GCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAG 139654 | | ||||||| | || ||| ||| | ||||| |||| |||||| |||| | Sbjct 8762 GGAGCATCGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGG 8703 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 | |||| || || || | | ||||| |||||| | | ||||| || | |||| | Sbjct 8702 CGCGGATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT 8643 Query 139715 CGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 || | | || ||||| || || || |||||||| ||| | | ||| ||||| Sbjct 8642 -GCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCCAGCAGGAAGCAA 8584 Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 ||||| || ||||| | |||||| || |||||| || || ||||||||||||| Sbjct 8583 GACGACAGCTGCGGGCGCGGCGTGCCAGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAG 8524 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGA 139891 | || |||||| | |||||||| |||| ||| |||| || ||| ||||| Sbjct 8523 AAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTT--GTGGA 8466 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 | ||||||| ||| || | | ||| || || || || || ||| ||| ||| Sbjct 8465 TGCCGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGCGACCTTGCCGCCGACGC 8406 Query 139952 ttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||| || ||||| || |||||| |||||||||| || | ||||||| Sbjct 8405 GCAGCAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAATCG 8350 >seq3295 Length=2747 Score = 176 bits (194), Expect = 4e-39 Identities = 989/1553 (64%), Gaps = 64/1553 (4%) Strand=Plus/Plus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || || || || |||| | || | ||| || ||||| | || || || ||| Sbjct 405 TCCTTCATGAGGTACTTGTTCACGATCGTAAACTCGCCGGCGAGCACGCGGCGGTTGTAC 464 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| | ||||| ||||||| ||| |||||||| || |||||||| || || | || Sbjct 465 ATGTTGGTCGTGAACGGCTCAATCGACTCGTTGTTGCCAAGAATCTGCGCAGTCGATGCC 524 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 || ||||| ||| | || || || || || | ||| | |||||| | ||||| Sbjct 525 GTTGGCATAGGCGCGAGCAGCAGCGAGTTGCGCACACCATACTGCTTGACGCTGGCCTTG 584 Query 138664 AGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720 |||| || ||||||||| | | | || | | |||||| ||||| || || Sbjct 585 AGCGCCGCCCAGTCCCAGAGGCCCGACGTCGGCGTGACGCCCCACATGTCGTATTGGAAG 644 Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACA--CCAAACTCTTGCGCCA 138778 || || || | || ||| || || | | |||| || ||| | || | Sbjct 645 ATGCCTTTGCTCACCGGGGAGCCCTCATAGC--TGGCATACGGGCCGTGCTCCTTGGCGA 702 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 || || |||||| | |||||| |||| | || ||| || | || ||||| Sbjct 703 GTTCCATGGACGCCTCCATCGCACCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGTT 762 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 || |||||| |||||| |||| || | | | ||||||||||| || || | Sbjct 763 CGCGTGCCTCGTTACTCTCGAACGGATGGCCCATGAGAATAAACGCGTCGGCGAGACCCT 822 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATT--TGACGCTTTTGCGGCTTC---GAT 138953 |||| || | |||| ||||| ||||||| || || |||| |||| || ||| Sbjct 823 GCACACCAATGCCGATCGGGCGGTGGCGCATGTTGCTG-CGCT----CGGCCTCTGGGAT 877 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATG 139013 || || ||||| | ||||||| ||||| || || ||| || ||||| || | | Sbjct 878 TGGGTAGTAGTTGATGTCGATGACCTTGTTCAAGTTGCGCGTCACGACCTTGGTGATGT- 936 Query 139014 CTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 | | | | | | || || | || ||||||||| || ||||| ||| Sbjct 937 CGTAGAGCTTCTTGAAGTCAAACGTT------TTGTCGTCGT-----TC-ACAAACTTG- 983 Query 139073 TGACACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGA 139129 |||| || || || | ||||||||| || || |||||||| | || |||| |||| Sbjct 984 -GACAGCGCGATGGACGCGAGGTTGCACACGGCGACCTCGTCGGGCGACG-TGTACTCGA 1041 Query 139130 CAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTC 139189 | ||| || | || || | |||||| || | || || || || || | Sbjct 1042 GCACCTCGCAGCAAAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGC 1101 Query 139190 GGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAA 139249 |||| || | || ||||| ||||| || || ||||| || || | |||| ||| | | Sbjct 1102 GGTTGCACGAGTCCTTGTACAGCATGTATGGCGTGCCCGTCTCGATCTGTGACTCGAGGA 1161 Query 139250 T---GAATTTGAACAA--GTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTC 139304 | ||| || | || | | | || || ||| || | || ||| Sbjct 1162 TCGCGAACCAGAGCTGCTGTGCGCGGATCGTCTTGCGCGCGCGGC-----CCTCCTTCTC 1216 Query 139305 GTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGG-CGTCAGAAAGATCGCGACAC 139362 ||||| | ||| || | ||||| |||| |||| | | ||| | ||| | | | Sbjct 1217 GTACTGGTGGTACAGCGCCTCGAACTCGT-CACCCCACGTCGTGT-AGAGACCCGGTGCC 1274 Query 139363 TTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCC 139422 | || || || | ||| ||| ||||||| |||| ||| ||| ||||||| |||||| Sbjct 1275 TCGTTGGGGCAGAAGAGGCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCC 1334 Query 139423 GGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTACG 139481 || ||||||| ||| | | || ||| || || | | || || || || | | Sbjct 1335 GGGATCCACATGGCGTAGAACAGATCACGGGCGCGATGGAGCT--CGTTACCGTGGTTCT 1392 Query 139482 T-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540 | || | || ||||| || || | || |||||||| ||||| || || || || | | Sbjct 1393 TCTTGAGGTCGAGGAACTCGAAGATATCCGCGTGCCACGGTTCGAGGTACATCGCGAACG 1452 Query 139541 CGCCTTTCCGTTTGCC---ACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597 ||| || || ||||| ||| || || |||| || | | | || || ||||| | Sbjct 1453 AGCCCTTTCGCTTGCCGCCACCCTGGTCCACGTAGCGCGCCGTGTCGTTAAACACGCGGA 1512 Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTC 139657 ||||||| | || ||| | | | ||||| |||| |||||| |||| || | Sbjct 1513 GCATCGGCACGAGGCCGTTTGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTGGCAC 1572 Query 139658 GGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGC 139717 | | || || || | | ||||| |||||| | | || || || || |||| | || Sbjct 1573 GAATGTTGTGCACGCTCACACCGATGCCGCCGGCCCACTTCGAGATGCAAGCGCACT-GC 1631 Query 139718 GTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGAC 139776 | | || ||||| || || || |||||||| ||| | | ||| ||||| ||| Sbjct 1632 TTCAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCAAGCAGGAAGCAAGAC 1691 Query 139777 GAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATT 139836 || || ||||| | |||||| || |||||| || || ||||||||||||| | Sbjct 1692 GACAGCTGCGGACGCGGCGTGCCCGCGTTAAACAGCGTCGGCGTCGCGTGCGTGAAGAAG 1751 Query 139837 TGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATAC 139894 || |||||| | |||||||| |||| ||| |||| || ||| |||||| | Sbjct 1752 CTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTT--GTGGATGC 1809 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 |||||| ||| || | | ||| || || || || || ||| ||| ||| Sbjct 1810 CGACAGCGACGCGGAGAATCATCTGCTGCGGGCGCTCCGCGACCTTGCCACCGACGCGCA 1869 Query 139955 tCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 |||||| ||||| || |||||| |||||||||| |||| |||||| Sbjct 1870 GCAGATACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTAGTCAAAATCG 1922 >seq200 Length=35225 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || || |||||||| || || | | Sbjct 31106 GATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTC 31047 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | || | || || || |||||||| ||||| || || || ||||| ||||| Sbjct 31046 GGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 30987 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| ||||| || ||||| ||||| | | | || || || || Sbjct 30986 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 30927 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || ||||| ||||| || ||| ||||| | || |||| || || | | ||||| Sbjct 30926 CATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGGTGCCATCGAGCC 30867 Query 24943 AACG 24946 ||| Sbjct 30866 CACG 30863 >seq2941 Length=3149 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 2840 GATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTC 2899 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || ||||| || ||||| || || || || || || || Sbjct 2900 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCA 2959 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||||| || ||||| ||||| | | |||| || || || Sbjct 2960 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAA 3019 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| ||||| |||| | || || ||| Sbjct 3020 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTCCGTGGTGGC 3068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449812383770840