Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_022065.1 Length=74533 Score E Sequences producing significant alignments: (Bits) Value seq480 197 7e-46 >seq480 Length=18429 Score = 197 bits (218), Expect = 7e-46 Identities = 400/592 (68%), Gaps = 9/592 (2%) Strand=Plus/Minus Query 65097 GCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACG 65156 |||| || ||||| ||||||||||| || || || ||| | || || || | Sbjct 5511 GCCGCGTCGTGGAGATCTACGGCCCGGAGAGCTCGGGCAAGACGACGCTCGCGCTGAGCT 5452 Query 65157 CGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCC 65216 | || | |||||| || || ||| | ||| | ||||||||| ||||| || Sbjct 5451 GCATCGCGCAGGCGCAGCAGCAGGGCGGCGTCTGCGCGTTCATCGACGCCGAGCATGCCA 5392 Query 65217 TGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 65276 | ||| | | ||||||||| |||||| || ||| ||||| | ||| | |||| Sbjct 5391 TCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGACGAGCTCTACATCTCGCAGC 5332 Query 65277 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 65336 | ||| | ||||||||||| || ||||||| ||| ||||| ||| |||| || Sbjct 5331 CCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCTCGTGCGGTCGGGCGCCGTGG 5272 Query 65337 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 65396 | | |||||||| ||| ||||| || || ||||||||||||||||| |||||||| | Sbjct 5271 ACGTGGTCGTCGTCGACAGCGTGGCCGCGCTCGTGCCGCGCGCCGAGCTGGAAGGCGAGA 5212 Query 65397 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 65456 | || ||| || ||| ||||| ||||| |||||| ||||| |||||||||||| Sbjct 5211 TGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAGCCAGGCGCTGCGCAAGCTCA 5152 Query 65457 CCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGA 65513 | ||| | | || |||| || ||| | ||| | |||||| | ||| ||| Sbjct 5151 CGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TCTTTCTGAACCAGATCCGCCAGA 5095 Query 65514 AGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGT 65573 | | |||| | | || |||| || ||| ||| ||||||||| ||| || | | Sbjct 5094 AAGTGGGCATCAT---CTTCGGCTCGCCCGAGGTCACGTCGGGCGGCACGGCGCTGCGCT 5038 Query 65574 TCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGG 65633 |||||| || || || | || | || |||| || | ||||||||||| ||| Sbjct 5037 ACTACGCGTCCGTGCGGCTCGACATTCGCCGCAAGGCGGCGATCAAGGAAGGCGACAAGG 4978 Query 65634 CTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65685 ||||||||| | | || ||||| | |||||||||||| || |||| Sbjct 4977 TCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAAGCTCGCATCGCC 4926 Score = 179 bits (198), Expect = 2e-40 Identities = 342/500 (68%), Gaps = 13/500 (3%) Strand=Plus/Minus Query 65191 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65250 ||| | ||||||||| ||||| || | ||| | | ||||||||| |||||| || || Sbjct 10578 CGCGTTCATCGACGCCGAGCATGCCATCGACGCGCACTACGCCAAGCAGCTCGGCGTCGA 10519 Query 65251 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 65310 | ||||| | ||| | ||||| ||| | ||||||||||| || ||||||| || Sbjct 10518 CATCGACGAGCTCTACATCTCCCAGCCCGACTCGGGCGAGCAGGCGCTCGAGATCGCGGA 10459 Query 65311 CCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTG 65368 | || || ||| |||| | ||| | | |||||||| ||| ||||| || || Sbjct 10458 CACGCTTGTGCGGTCGGGCG--CCGTCGACGTGGTCGTCGTCGACAGCGTGGCCGCGCTT 10401 Query 65369 GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGC 65428 ||||||||||||||| | |||||||| || || ||| || ||| ||||| ||||| Sbjct 10400 GTGCCGCGCGCCGAGTTGGAAGGCGAGATGGGCGACCAGCAGATCGCGCTGCAGGCGCGG 10341 Query 65429 CTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTG 65485 |||||| ||||| ||||||||||||| ||| | | || |||| || ||| Sbjct 10340 CTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCTCGCTGAGCAAGTCCAACTGCATGCTC 10281 Query 65486 ACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAG 65545 | ||| | |||||| | ||| |||| |||||| | | || ||| || ||| Sbjct 10280 A---TCTTTCTGAACCAGATCCGCCAGAAAGTCGGCATCAT---CTTTGGCTCGCCCGAG 10227 Query 65546 ACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGC 65605 ||| ||||||||| ||| || | | |||||| || ||||| | || | || ||| Sbjct 10226 GTCACGTCGGGCGGCACGGCGCTGCGCTACTACGCGTCCGTCCGGCTCGACATTCGCCGC 10167 Query 65606 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTC 65665 | || | || || ||||| ||| ||||||||| | | || ||||| | | Sbjct 10166 AAGGCGGCGATCAAAGAGGGCGACAAGGTCGTCGGCAACGAGATCGTCGTCAAGGTGGCC 10107 Query 65666 AAGAACAAGCTGGCCCCGCC 65685 ||||||||||| || |||| Sbjct 10106 AAGAACAAGCTCGCGTCGCC 10087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238336776504302