Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2941 134 1e-26 seq81 125 7e-24 seq200 123 3e-23 seq3295 113 5e-20 >seq2941 Length=3149 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCC 134545 || || | ||| |||| ||| ||||| ||||| || ||||| || |||||||||| || | Sbjct 3067 CCACCACGGAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 3008 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | ||| |||||||| ||||| ||||| |||| |||||||| || ||||| Sbjct 3007 AGC-GTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 2949 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || ||||| || || || || ||| | | ||| |||| ||||| Sbjct 2948 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 2889 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || || || || | || || ||||| || ||||| Sbjct 2888 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq81 Length=54637 Score = 125 bits (138), Expect = 7e-24 Identities = 346/523 (66%), Gaps = 17/523 (3%) Strand=Plus/Plus Query 7470 CCACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTT 7529 |||||| ||||||| ||| ||| || |||| | | || || | | || ||| | Sbjct 8341 CCACGACCGCGATTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCT 8400 Query 7530 GTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGT 7589 | || || |||| | |||||| || || || ||| | | ||||| || || Sbjct 8401 GCTGCGCGTCGGCGGCAAGGTCGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGT 8460 Query 7590 GGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAA 7649 ||||| ||| | |||||||||||||| | || |||||| | ||||| | | Sbjct 8461 CGGCATCCACAAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTC---GCA 8517 Query 7650 ACAGTTT----ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT-CAA 7704 | || || |||||||| |||| || ||||| ||| ||||| |||||| || Sbjct 8518 A-AGCTTCTTCACGCACGCGACGCCGACGCTGTTTAACGCTGGCACGC-CGCGCCCGCAG 8575 Query 7705 TTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACG 7764 |||| || || || |||| ||||| || ||| ||||| ||||| ||| ||||| Sbjct 8576 CTGTCGTCTTGCTTCCTGCTGGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACG 8635 Query 7765 CTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGAC 7824 || | |||||| || ||||| | | |||||| || ||| ||| ||| || || Sbjct 8636 CTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAAC 8695 Query 7825 GTGCGCGCCAACGGTAGCCG--CATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 | ||||||| | | || |||| ||| ||||| | | ||| | | || Sbjct 8696 ATCCGCGCCACCA--ACTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGC 8753 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCA 7939 | ||| | ||||||||||| || ||| ||| | || |||||||| || ||||||| Sbjct 8754 CGATGCTCCGCGTGTTCAACGACACGGCGCGCTACGTGGACCAGGGCGGCGGCAAGCGCA 8813 Query 7940 AAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACAT 7982 | ||| | ||||| || | |||||||||||||||||||| Sbjct 8814 AGGGCTCGTTCGCCATGTACCTCGAGCCGTGGCACGCGGACAT 8856 >seq200 Length=35225 Score = 123 bits (136), Expect = 3e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| | ||| | Sbjct 30888 AGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 30947 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||||| || || ||||| || Sbjct 30948 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCC 31007 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| || ||||| | || || | || |||||||| || Sbjct 31008 TTGTCCTGGATCTTCTGCTTGACATTGT-CAATGCTATCCGAAGGCTCGACGTCGAGCGT 31066 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| | ||| || ||||| || ||||| || Sbjct 31067 GATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 31108 >seq3295 Length=2747 Score = 113 bits (124), Expect = 5e-20 Identities = 909/1444 (63%), Gaps = 57/1444 (4%) Strand=Plus/Minus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 |||||| || || || ||| | | ||||| || || ||||| ||| | ||||| Sbjct 1850 CGCGGAGCGCCCGCAGCAGATGATTCTCCGCGTCGCTGTCGGCATCCACAAGCACGACAT 1791 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT----ACGCACGCTT 7666 ||||||||| | || |||||| | ||||| | || || || |||||||| Sbjct 1790 TGACGCCGCGCTCGAGACGTACGAGTACATGTC---GCAA-AGCTTCTTCACGCACGCGA 1735 Query 7667 CGCCCACCATGTTTGCCGCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTA 7725 |||| || ||||| ||||||||| |||| || || |||| || || || |||| Sbjct 1734 CGCCGACGCTGTTTAACGCGGGCACGC-CGCGTCCGCAGCTGTCGTCTTGCTTCCTGCTT 1676 Query 7726 ACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATT 7785 ||||| || ||| ||||| ||||| ||| |||||||| | ||||| || Sbjct 1675 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTGAAGCAGTGCGCTTGCATC 1616 Query 7786 TCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCG- 7844 || || | | |||||| || ||| ||| ||| || || | || |||| | | || Sbjct 1615 TCGAAGTGGGCCGGCGGCATCGGTGTGAGCGTGCACAACATTCGTGCCACCA--ACTCGT 1558 Query 7845 -CATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATA 7903 |||| ||| ||||| | | ||| | | ||| ||| | |||||||| || Sbjct 1557 ACATCCGCGGCACGAACGGCTCGTCAAACGGCCTCGTGCCGATGCTCCGCGTGTTTAACG 1498 Query 7904 ACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATT 7960 || ||| ||| | || |||||||| || ||||| || ||| | || || || Sbjct 1497 ACACGGCGCGCTACGTGGACCAGGGTGGCGGCAAGCGAAAGGGCTCGTTCGCGATGTACC 1438 Query 7961 TGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCG 8020 | || |||||||||||||| || | || | || | || ||| ||| || Sbjct 1437 TCGAACCGTGGCACGCGGATATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGTAACG 1378 Query 8021 AAGACAGCAAAGCG--CGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAG 8078 | | || ||| || ||||| |||| || ||||| | || ||||| || |||| Sbjct 1377 A--GCTCCATCGCGCCCGTGATCTGTTCTACGCCATGTGGATCCCGGATCTCTTCATGAA 1320 Query 8079 GCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCC---TTTATT 8135 ||| || | | ||| | ||| ||| | |||||| | || || | | | Sbjct 1319 GCGAGTCGAGGCCAACGGCGAGTGGAGCCTCTTCTGCCCC-AACGAGGCACCGGGTCTCT 1261 Query 8136 AAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGC 8195 | | ||| | ||| | || || ||||| | || ||||| | || ||| | Sbjct 1260 ACACGACG--TGGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGAAGGAGGGC-C 1204 Query 8196 GTACGTGCGGCAAGTGAAAGCGCGC-GACCTGCACCG---CGCCATTATCGAATGTCAAA 8251 | || || ||||| | ||||| | | || | | ||| || |||| | || | Sbjct 1203 G--CGCGC-GCAAGACGATCCGCGCACAGCAGCTCTGGTTCGCGATCCTCGAGTCACAGA 1147 Query 8252 ACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAA 8311 ||| || || | ||| |||||||||||||| ||| | |||||| ||| || || Sbjct 1146 TCGAGACGGGCACGCCATACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGC 1087 Query 8312 GCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGC 8371 ||| | ||||| || | | ||||| || ||| || | | |||||| ||| Sbjct 1086 AGAACCTCGGCACGATCCGCTCGAGCAACCTTTGCTGCGAGGTGCTCGAGTACACGTCGC 1027 Query 8372 CCGACGAAGTGGCCGTTTGCAATCTAGCG----TCGGTGTGTTTAAACGCGTTCGTTGAT 8427 ||||||| || ||||| ||||| || ||| ||| ||| || ||| | ||| Sbjct 1026 CCGACGAGGTCGCCGTGTGCAACCTCGCGTCCATCGCGCTGTCCAA----GTTTG-TGAA 972 Query 8428 CGACGCTCAAACACTTACGACTT--TGAA-CAATTGAAAAACGCCGTGCAAGTGACGGTA 8484 ||||| |||| || | ||||| ||| | | | | | || | |||||| Sbjct 971 CGACG-ACAAA-ACGTTTGACTTCAAGAAGCTCTACGACATCACCAAGGTCGTGACG--- 917 Query 8485 CGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAG-CGCGCGTATC 8543 ||||| || | |||| || |||| | || || | ||| | || ||| | | Sbjct 916 CGCAACTTGAACAAGGTCATCGACATCAACTACTACCCAATCCCAGAGGCCGAGCGCAGC 857 Query 8544 GAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCAT 8603 |||||||||||| | || | ||| | || ||||| ||||| |||||||||||| | Sbjct 856 -AACATGCGCCACCGCCCGATCGGCATTGGTGTGCAGGGTCTCGCCGACGCGTTTATTCT 798 Query 8604 GTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAAC 8663 || ||| || | ||| || | || || ||| ||||||| || || || || Sbjct 797 CATGGGCCATCCGTTCGAGAGTAACGAGGCACGCGAACTCAACAAGAACATCTTCGAGAC 738 Query 8664 GGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGA 8723 | |||| | ||| || | || || | |||| ||| || ||| |||| | Sbjct 737 GCTGTACTTCGGTGCGATGGAGGCGTCCATGGAACTCGCCAAGGAGCACGGCCCGTATGC 678 Query 8724 ATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCAC 8783 || | |||| ||| | ||| || || || ||||||||||||||| ||||| Sbjct 677 CAGCTATGAGGGCTCCCCGGTGAGCAAAGGCATCTTCCAATACGACATGTGGGGCGTCAC 618 Query 8784 GCCCACCTC---TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTT 8840 ||| || || | ||| | ||| | | || || | || | ||| | Sbjct 617 GCCGACGTCGGGCCTCTGGGACTGGGCGGCGCTCAAGGCCAGCGTCAAGCAGTATGGTGT 558 Query 8841 GCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAA 8900 |||||| |||||| || | || ||||| || || ||||||| || || | || || Sbjct 557 GCGCAACTCGCTGCTGCTCGCGCCTATGCCAACGGCATCGACTGCGCAGATTCTTGGCAA 498 Query 8901 CAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGA 8960 |||||| || ||||||||||||| | |||| ||||| | || ||| | |||||||| Sbjct 497 CAACGAGTCGATTGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCGCCGGCGA 438 Query 8961 TTTT 8964 ||| Sbjct 437 GTTT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505302671225560