Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq72 152 2e-31 seq9631 93.3 1e-13 seq12836 91.5 4e-13 seq6829 86.0 2e-11 >seq72 Length=56993 Score = 152 bits (168), Expect = 2e-31 Identities = 911/1445 (63%), Gaps = 18/1445 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | ||| ||||| || || || || || Sbjct 5412 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGTGTGTGGCAGAACGACCGCGTCGAG 5353 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || |||||| | || ||||| || |||||||| || || || || Sbjct 5352 ATTATCGCCAACGACCAGGGTAACCGCACGACGCCGTCGTACGTTGCCTTCACGGACACG 5293 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | ||| || | | || ||||| Sbjct 5292 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCTATGAACGCCACGAACACGGTG 5233 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || || ||||| |||||||| | ||||| | | || | || |||| | Sbjct 5232 TTCGACGCCAAGCGTCTTATTGGCCGCAAGTTCAGCGACCCGATTGTC-CAGGCTGACAT 5174 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | ||||| || || || | || || || || || |||| | Sbjct 5173 CAAGCACTGGCCTTTCACGGTGTCGCCCGGCGCTGGCGACAAGCCGCAGATCACGGTTCA 5114 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 5113 GTTCAAGGGCGAGTCGAAGACG-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 5055 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| || | | ||| | || | | || || || || | Sbjct 5054 AGATGCGTGAGGTCGCTGAGGCCTTCATTGGTAAGGAGGTGAAGAACGCCGTCATCACGG 4995 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || |||||||| ||| || | Sbjct 4994 TCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCTACCAAGGATGCTGGTGCCATCGCTG 4935 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || ||||| || || || ||||| || ||||| || || || | Sbjct 4934 GCCTCAACGTGCTCCGTATCATTAACGAGCCTACGGCTGCCGCTATTGCTTACGGCCTCG 4875 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | ||| || || |||| || || ||| | ||||| ||||| || | Sbjct 4874 ACAAGAAGGGTGGT---GAGCGCAACGTTCTCATCTTCGATCTTGGTGGCGGTACCTTCG 4818 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| ||||| || || || || || |||||||| | Sbjct 4817 ATGTGTCGCTCCTGAGCATTGAGGAGGGCATTTTCGAGGTCAAGGCTACGGCTGGTGACA 4758 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||||||||||| || ||||| || || || || || || || || || | Sbjct 4757 CCCATCTTGGTGGTGAGGATTTCGACAACCGCCTTGTCGACCACTTCACGGCCGAGTTCA 4698 Query 349923 AGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| ||||| | ||| | ||| || | | || | || || || | || Sbjct 4697 AGCG-CAAGCACCGCAAGGATCTCACGAG-CAACCAGCGTGCCCTCCGCCGTCTCCGCAC 4640 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || || || || |||||||| | | || || | | || ||| || || ||||| Sbjct 4639 GGCCTGCGAGCGCGCTAAGCGCACGCTTTCGTCGTCGGCTCAGGCCTACATCGAGATTGA 4580 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || ||||| || ||| || | || || ||||| || || || || | Sbjct 4579 CTCGCTGTTCGATGGTGTTGACTTCAACTCCACGATCACGCGTGCCCGTTTCGAGGACCT 4520 Query 350101 ATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 || ||| || || ||| || ||||| ||||| || || || | || || Sbjct 4519 CTGCGCGGA-CTACTT-CCGCAAGACCATGGAGCCTGTTGAGAAGGTTCTCCGTGACGCC 4462 Query 350159 AAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCA 350218 || | ||||| | ||| | | || || || | || ||||| || || ||||| || Sbjct 4461 AAGCTCTCCAAGAGCCAGGTCCACGAGGTCGTCCTTGTCGGTGGCTCCACCCGTATCCCG 4402 Query 350219 AAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAAT 350278 || || || ||| | || || || || || || ||||| || || | | || || || Sbjct 4401 AAGGTGCAGCAGCTCCTGTCGGACTTCTTCAACGGCAAGGAGCCCTGCAAGTCGATCAAC 4342 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGGAAATAA 350337 || ||||| ||||| || | ||||| |||| ||||| |||| | | | | || | Sbjct 4341 CCTGATGAGGCTGTCGCCTTCGGTGCCACTGTCCAGGCTGCTATCCTCAGCGGCAACGAT 4282 Query 350338 GAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| | || | | ||||| | || || ||||| || || || ||||| || | Sbjct 4281 CAGTCGGAGAAGCTCCAGGATCTGCTCCTCCTCGATGTGACGCCTCTGTCGCTCGGTCTT 4222 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || | |||| || ||||| || || || | || | || || || || || Sbjct 4221 GAGACGGCCGGTGGTGTGATGACGACGCTCATCCCCCGTAACACGACCGTGCCCACGAAG 4162 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || || || || || | || || || ||||| | || || || || || Sbjct 4161 AAGACGCAGACGTTCTCGACGTACGCCGACAACCAGCCTGGTGTGCTTATCCAGGTCTTC 4102 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || ||||| ||| | || || || ||| || || | || | ||| | Sbjct 4101 GAGGGTGAGCGTTCGATGACGCGCGACAACAATCTCCTCGGCAAGTTCAACCTTGACGGT 4042 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || ||||| | || || || ||||| || ||| | |||||||| || | || Sbjct 4041 ATCCCGCCGATGCCGCGTGGTGTGCCCCAGATCGACGTCACGTTCGATATCGACGCCAAC 3982 Query 350636 GGTAT 350640 ||||| Sbjct 3981 GGTAT 3977 >seq9631 Length=615 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 12 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCGATA 71 Query 235950 CCCAGCATCTCCAT 235963 |||||| ||||||| Sbjct 72 CCCAGCTTCTCCAT 85 >seq12836 Length=386 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 90 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCGATA 31 Query 235950 CCCAGCATCTCCA 235962 |||||| |||||| Sbjct 30 CCCAGCTTCTCCA 18 >seq6829 Length=1048 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | |||||||||||||||||||||||||| |||| | Sbjct 326 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTGGACCGC 267 Query 74548 TCGGGCA 74554 ||||||| Sbjct 266 TCGGGCA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514960216672859