Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq152 201 9e-47 seq882 86.0 5e-12 >seq152 Length=41146 Score = 201 bits (222), Expect = 9e-47 Identities = 433/641 (68%), Gaps = 10/641 (2%) Strand=Plus/Plus Query 29824 GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29882 ||| |||| ||| || ||||| | | |||| | | | | ||||| ||| || || | Sbjct 26656 GTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGGACCTTGAGGGGCT 26714 Query 29883 CCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTA 29942 | || | ||||||||| | ||||||||| || | | |||| | || || |||| | Sbjct 26715 CGACATGATCCAGGTAAATGTGAGCGTCCCCAATGGTGTGAATGAAGTCACCCGCCCGCA 26774 Query 29943 GCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTA 30002 | || || || || || |||| ||| | ||| | |||||| |||||||| ||||| | Sbjct 26775 GTCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGTTGAAGGGCA 26834 Query 30003 CCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCA 30062 | ||||| |||||||| | || | ||| || | ||| || || ||||| ||||| | Sbjct 26835 CACCGAGACCCATGTCAGCTGAGCGCTGATACATCTGGCAAGACAGCTCACCGTCCGCGA 26894 Query 30063 CGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGT 30122 |||||||||| || | |||||| || || || ||||| | || |||| Sbjct 26895 CGTAAAACTGGCAGAACATGTGGCAGGGGGGCAGTGCCATTTCCTTGAGATCGGCCGGGT 26954 Query 30123 TCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGTTG--TTCCTGATGAGGTCCACGG 30179 |||| || ||| ||| ||||| | ||| ||| | ||| ||| |||| ||| Sbjct 26955 TCCATGCTGACATGATTATGCGACGGTCGTTCGGATTTGTCTTCAGTTTGAGAATCACCT 27014 Query 30180 CGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 || || ||||| || || ||| || | |||||| || ||| |||||||| | Sbjct 27015 CG----GCAAGCTGGTCGACGCCCTGACCAGTGTAGTCGGCGTGCATCGTCGTGTACTTT 27070 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || ||||| || | ||||||||| |||||||||||||| |||||||| |||| | || Sbjct 27071 GCGCCGAAGTGGCGCCACTGGAAGCCGTACACCGGTCCGAGGTCTCCGGCTTCACGATGA 27130 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30358 ||| || | | || | | | || | || || ||| | |||||||| || | ||| Sbjct 27131 CCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAGATTTTGATGCCC 27190 Query 30359 TTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30418 || || ||| |||| ||| ||| || |||| |||||||| ||| ||||| | Sbjct 27191 TTGTCCTGTAGCGTCTTGGCGTTGGTGTCACCACTGATGAACCACAACAGTTCCTCTGCA 27250 Query 30419 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 || | ||| || || | |||||||| || || ||||| Sbjct 27251 ACACCGCGCCAGAACACGCGTTTGGTCGTAAGAAGTGGAAA 27291 >seq882 Length=11095 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| || Sbjct 1841 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACCA 1898 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52877 ||| | ||||||||||||||| ||| || | | || || |||||| ||||||||||| Sbjct 1899 TCCGCAACCAGGAGGACATGCCGTTCAACGACCAGGGCGT-GTGCCCGGACCTCATCATG 1957 Query 52878 AACCCCCACGCCTTTCC 52894 ||||| |||| ||| || Sbjct 1958 AACCCGCACGGCTTCCC 1974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406235363738076