Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq480 197 7e-46 >seq480 Length=18429 Score = 197 bits (218), Expect = 7e-46 Identities = 340/492 (69%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 66248 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66307 ||||||||| ||||| || | ||| | | ||||||||| |||||| || ||| |||| Sbjct 5411 CATCGACGCCGAGCATGCCATCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGA 5352 Query 66308 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367 | | ||| | ||||| ||| | ||||||||||| || ||||||| ||| || Sbjct 5351 CGAGCTCTACATCTCGCAGCCCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCT 5292 Query 66368 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 66427 ||| ||| |||| || | | |||||||| ||| ||||| || || |||||||| Sbjct 5291 CGTGCGGTCGGGCGCCGTGGACGTGGTCGTCGTCGACAGCGTGGCCGCGCTCGTGCCGCG 5232 Query 66428 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 66487 ||||||||| |||||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 5231 CGCCGAGCTGGAAGGCGAGATGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATGAG 5172 Query 66488 GCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTG 66544 ||||| ||||||||||||| ||| | | || |||| || ||| | ||| Sbjct 5171 CCAGGCGCTGCGCAAGCTCACGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TCTT 5115 Query 66545 GGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCAC 66604 | |||||| | ||| |||| | |||| | | || |||| || |||| ||| | Sbjct 5114 TCTGAACCAGATCCGCCAGAAAGTGGGCATCAT---CTTCGGCTCGCCCGAGGTCACGTC 5058 Query 66605 GGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCAC 66664 |||||||| ||| || | | |||||| || || || | || | || |||| || | Sbjct 5057 GGGCGGCACGGCGCTGCGCTACTACGCGTCCGTGCGGCTCGACATTCGCCGCAAGGCGGC 4998 Query 66665 CGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 66724 ||||||||||| ||| ||||||||| | | || ||||| | ||||||||| Sbjct 4997 GATCAAGGAAGGCGACAAGGTCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAACAA 4938 Query 66725 GCTGGCCCCGCC 66736 ||| || |||| Sbjct 4937 GCTCGCATCGCC 4926 Score = 181 bits (200), Expect = 5e-41 Identities = 339/494 (69%), Gaps = 13/494 (3%) Strand=Plus/Minus Query 66248 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66307 ||||||||| ||||| || | ||| | | ||||||||| |||||| || ||| |||| Sbjct 10572 CATCGACGCCGAGCATGCCATCGACGCGCACTACGCCAAGCAGCTCGGCGTCGACATCGA 10513 Query 66308 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367 | | ||| | ||||| ||| | ||||||||||| || ||||||| ||| || Sbjct 10512 CGAGCTCTACATCTCCCAGCCCGACTCGGGCGAGCAGGCGCTCGAGATCGCGGACACGCT 10453 Query 66368 CGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCG 66425 || ||| |||| | ||| | | |||||||| ||| ||||| || || |||||| Sbjct 10452 TGTGCGGTCGGGCG--CCGTCGACGTGGTCGTCGTCGACAGCGTGGCCGCGCTTGTGCCG 10395 Query 66426 CGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATG 66485 ||||||||| | |||||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 10394 CGCGCCGAGTTGGAAGGCGAGATGGGCGACCAGCAGATCGCGCTGCAGGCGCGGCTCATG 10335 Query 66486 TCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTC 66542 ||||| ||||||||||||| ||| | | || |||| || ||| | || Sbjct 10334 AGCCAGGCGCTGCGCAAGCTCACGGGCTCGCTGAGCAAGTCCAACTGCATGCTCA---TC 10278 Query 66543 TGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACC 66602 | | |||||| | ||| |||| |||||| | | || ||| || |||| ||| Sbjct 10277 TTTCTGAACCAGATCCGCCAGAAAGTCGGCATCAT---CTTTGGCTCGCCCGAGGTCACG 10221 Query 66603 ACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCC 66662 ||||||||| ||| || | | |||||| || ||||| | || | || |||| || Sbjct 10220 TCGGGCGGCACGGCGCTGCGCTACTACGCGTCCGTCCGGCTCGACATTCGCCGCAAGGCG 10161 Query 66663 ACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAAC 66722 | || || ||||| ||| ||||||||| | | || ||||| | ||||||| Sbjct 10160 GCGATCAAAGAGGGCGACAAGGTCGTCGGCAACGAGATCGTCGTCAAGGTGGCCAAGAAC 10101 Query 66723 AAGCTGGCCCCGCC 66736 ||||| || |||| Sbjct 10100 AAGCTCGCGTCGCC 10087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240915500184900