Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq200 154 3e-32 seq2941 152 1e-31 seq3295 100 7e-16 seq420 93.3 1e-13 seq81 87.8 4e-12 >seq200 Length=35225 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 30894 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 30953 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || || || ||||| | || ||||||||| Sbjct 30954 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 31013 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || || ||| | || || || || ||||| ||||||||| Sbjct 31014 TGGATCTTCTGCTTGACATTGTCAATGCTATCCGAAGGCTCGACGTCGAGCGTGATCGTC 31073 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || |||||||| || || | |||||| || Sbjct 31074 TTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 31108 >seq2941 Length=3149 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | || || Sbjct 3052 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCC 2993 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 2992 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 2933 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 2932 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 2873 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 2872 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq3295 Length=2747 Score = 100 bits (110), Expect = 7e-16 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| ||| || |||| ||||| || || || |||||||||| | ||| Sbjct 1169 CCAGAGCTGCTGTGCGCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTA 1228 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATC--GAGACCGGGAGCCTCATTGGGGCAG 178297 ||| ||||||| || ||| || || | |||||| || ||||| ||||||||| Sbjct 1229 CAGCGCCTCGAACTC--GTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTGGGGCAG 1286 Query 178298 AAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATG 178357 ||||| ||||||| |||| ||| ||||| ||||||||||| || | | |||| ||| Sbjct 1287 AAGAGGCTCCACTCGCCGTTGGCCTCGACTCGCTTCATGAAGAGATCCGGGATCCACATG 1346 Query 178358 GCATAGAA 178365 || ||||| Sbjct 1347 GCGTAGAA 1354 >seq420 Length=20579 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | ||||| Sbjct 5191 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCC 5132 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| |||||||| ||||| || || || ||||||| |||| Sbjct 5131 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATCCGGAGGAATTCCT 5081 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| || || | ||||| Sbjct 5452 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 5393 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| |||||||| ||||| || || || ||||||| |||| Sbjct 5392 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATTCCT 5342 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| | || || || || ||| |||| || || || || Sbjct 5010 CCCTCCTTGTCCTGGATCTTGTTCTTGACATTGTCAATGCTGTCGGACGGCTCGACGTCC 4951 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||||||||| |||||||| ||||| || || | ||||||||| || Sbjct 4950 AGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTCTG 4901 >seq81 Length=54637 Score = 87.8 bits (96), Expect = 4e-12 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 178124 TCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAAT-GTGATGCCA 178182 || |||||| ||| | ||| | ||| ||| |||| | |||| || | || ||| Sbjct 9159 TCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGAGACTCGAGGATCGCGAA-CCA 9101 Query 178183 AAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAG 178242 |||| ||| || |||| ||||| || || || |||||||||| | ||| || Sbjct 9100 GAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCCTTCTCGTACTGGTGGTACAG 9041 Query 178243 CTCCTCGAATTCCGGTCCATAGACATCATCGAGA--CCGGGAGCCTCATTGGGGCAGAAG 178300 | ||||||| || ||| || || | ||| || || ||||| || ||||||||| Sbjct 9040 CGCCTCGAACTC--GTCGCCCCACGTCGTGTAGAGCCCCGGGGCCTCGTTCGGGCAGAAG 8983 Query 178301 AGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCA 178360 || ||||||| |||| ||| || || ||||||||||| || | | |||| ||||| Sbjct 8982 AGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCCGGGATCCACATGGCG 8923 Query 178361 TAGAA 178365 ||||| Sbjct 8922 TAGAA 8918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158926953174845