Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq152 158 1e-33 >seq152 Length=41146 Score = 158 bits (174), Expect = 1e-33 Identities = 463/713 (65%), Gaps = 19/713 (3%) Strand=Plus/Plus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589 ||| || | |||||| ||||| |||||| || | ||| ||||| | || | | Sbjct 26587 GTGCGGCTTGTAGCCTTCCAGATCGAAATCTTCAAACACAAAATCGTCGATACTGTGCGT 26646 Query 29590 CCTCCT---GTTTATCCTCAGTGT-GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCC 29645 | || ||| |||| ||| || ||||| | | |||| | | | | ||||| | | Sbjct 26647 CTTCTCAGGGTTGATCCGCAGCGTTGGGAACGCGCGTGGGGTGCGCC-CTAGCTGGACCT 26705 Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 | || || || || || || ||||| | |||||| || || | |||||| | || || | Sbjct 26706 TGAGGGGCTCGACATGATCCAGGTAAATGTGAGCGTCCCCAATGGTGTGAATGAAGTCAC 26765 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 ||| || || || || || || |||| ||| | ||| | |||||| ||||||| Sbjct 26766 CCGCCCGCAGTCCTGTAACCTGCGCGATCAGCCGCGTCAAGAGTGCGTAGCTCGCGATGT 26825 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTC 29825 | |||||||| ||||| |||||||| |||| | ||| || | |||||| || ||||| | Sbjct 26826 TGAAGGGCACACCGAGACCCATGTCAGCTGAGCGCTGATACATCTGGCAAGACAGCTCAC 26885 Query 29826 CGTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCA 29882 |||| ||||||||||| | ||||| ||||| || || || ||||| | Sbjct 26886 CGTCCGCGACGTAAAACTGGCAGAACATG---TGGCAGGGGGGCAGTGCCATTTCCTTGA 26942 Query 29883 AGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTG--TTCCTGA 29939 || |||||||| || ||| ||| ||||| | ||| ||| | ||| ||| Sbjct 26943 GATCGGCCGGGTTCCATGCTGACATGATTATGCGACGGTCGTTCGGATTTGTCTTCAGTT 27002 Query 29940 TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 |||| ||| || || ||||| || || ||| || | |||||| | Sbjct 27003 TGAGAATCACCTCG----GCAAGCTGGTCGACGCCCTGACCAGTGTAGTCGGCGTGCATC 27058 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 |||| || | ||||||||| |||||||||||||| |||||||| Sbjct 27059 GTCGTGTACTTTGCGCCGAAGTGGCGCCACTGGAAGCCGTACACCGGTCCGAGGTCTCCG 27118 Query 30059 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30118 |||| | || ||| || | | || | | | || | || || ||| | |||||| Sbjct 27119 GCTTCACGATGACCGAGACCAATGCTTTCGAGATATTCCTTTGACCCATTGCCATCCCAG 27178 Query 30119 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30178 || || | ||||| || ||| |||| ||| ||| || |||| |||||||| | Sbjct 27179 ATTTTGATGCCCTTGTCCTGTAGCGTCTTGGCGTTGGTGTCACCACTGATGAACCACAAC 27238 Query 30179 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 || ||||| | || | ||| || || | |||||||| || || ||||| Sbjct 27239 AGTTCCTCTGCAACACCGCGCCAGAACACGCGTTTGGTCGTAAGAAGTGGAAA 27291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406088190922558