Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq200 178 3e-39 seq2941 174 3e-38 seq774 140 7e-28 seq272 98.7 2e-15 seq420 89.7 1e-12 >seq200 Length=35225 Score = 178 bits (196), Expect = 3e-39 Identities = 180/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 30878 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 30937 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || || || || Sbjct 30938 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 30997 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||| || || | || || | ||||||| |||| Sbjct 30998 GATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTATCCGAAGGCTCGA 31056 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| ||||||||||| || |||| |||||| ||||| |||||||| || Sbjct 31057 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 31108 >seq2941 Length=3149 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | ||| || || |||||||||||||| | Sbjct 3067 CCACCACGGAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAC 3008 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||||||||||| || || ||||| ||| Sbjct 3007 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 2948 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||||| ||| | ||||| | |||||| | || || Sbjct 2947 ATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCAC 2889 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 2888 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 2841 >seq774 Length=12512 Score = 140 bits (154), Expect = 7e-28 Identities = 206/290 (71%), Gaps = 10/290 (3%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 |||| |||||| ||||| | | ||||| ||||||||||||||| |||| || || Sbjct 9952 CAGTAGCGTGAAGATGTAACGTGGGCTCGCGGCGTCCTTGCCACCTTGTAGCCGCGTGCC 9893 Query 273833 AAACTGACCCTCGGGC---AGTAGC--CAGTTTATGTTGTTGCTACCGACGTAATCCTGA 273887 |||||| ||| || || ||| ||| ||||||| ||||| || ||||| Sbjct 9892 AAACTGGCCCGACGGATAGAGGAGCGGCAG-----GTTGTTGGCGCCGACATAGTCCTGC 9838 Query 273888 GCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCG 273947 ||||| || ||||| ||| || || || |||||||||||||||| || |||| ||| Sbjct 9837 GCCATGTTGACGATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGATACGCCGTGTGCTCG 9778 Query 273948 GCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCG 274007 | ||||| | ||| || ||||| || || |||||| || ||||||| Sbjct 9777 CTGCAGTAACCCGCCAGCTGCGCTACCTTGACTTCCTTCGTCAGCTTGCGCTTGAGGCAC 9718 Query 274008 GAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 | | |||| ||||||||||||||| ||||| |||||| ||||| || || Sbjct 9717 GCAAACAAAACCTTCCGCTGCGAGACCTTGAGCCCATCGACGACGGAGGG 9668 >seq272 Length=27858 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| || || || | Sbjct 24013 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTGATATCCAAG 23954 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| ||||||||||| |||||||| || ||||| || | |||||| || ||| Sbjct 23953 TGCTCCTCAATGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGAAACGCATGGCCGGGTGC 23894 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| ||| | || | | || || | || || || ||||| Sbjct 23893 TTCCAGACCGTACCGACAGTGGGCTCAACTTCACCCGTCAACATCTTGATAAGAGTCGAC 23834 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGA 316388 || || || ||||| || || ||| |||| | ||| |||||| Sbjct 23833 TTGCCGGCACCGTTGGGGCCAACAACAGCGATACGCGAGGCGAGCGA 23787 >seq420 Length=20579 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 5207 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 5148 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||||||||||||||||| || || || || || ||||||| || || || || Sbjct 5147 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGATC 5094 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||||||||| |||||||| || || | || || |||| || | ||||| | Sbjct 5012 TACCCTCCTTGTCCTGGATCTTGTTCTTGACATTGTCAATGCTGTCGGACGGCTCGACGT 4953 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 4952 CCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 4903 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| | Sbjct 5468 ACCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 5409 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||||||||| || || || ||||| ||||||| || || || || Sbjct 5408 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 5355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046535977874062