Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950815.1_202016-12-27] 15,153 sequences; 47,142,494 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2941 141 2e-28 seq200 134 3e-26 seq420 87.8 4e-12 >seq2941 Length=3149 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 2844 CAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 2903 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || |||||||||||||| || || ||||| ||||||||||| Sbjct 2904 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 2963 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || || | || || ||| || Sbjct 2964 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAACATC 3023 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 3024 CAGAAGGAGTCGACGCTGCACCTGGT 3049 >seq200 Length=35225 Score = 134 bits (148), Expect = 3e-26 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 31113 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 31057 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || || | ||| || || ||||| || ||||| |||||||| || || |||| Sbjct 31056 TCGAGCCTTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCC 30997 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||| ||||| || || ||||||||||| || |||||||| || || | || || Sbjct 30996 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCT 30937 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || || || || || Sbjct 30936 CGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGT 30897 >seq420 Length=20579 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| |||||||| ||||| || || ||||||||||| || |||||||| ||||| | Sbjct 5342 AGGAATTCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCG 5401 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | || || ||| |||| || || || || ||||| || || Sbjct 5402 CACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTGCACCTCGT 5449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203497498220682