Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq72 179 8e-40 seq9 123 5e-23 >seq72 Length=48362 Score = 179 bits (198), Expect = 8e-40 Identities = 686/1058 (65%), Gaps = 53/1058 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 24115 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAG 24174 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 24175 GTGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 24234 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| || || || Sbjct 24235 CTTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATAAGCGTCGA 24294 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCAT- 319228 || || |||||||| ||| | ||| | || | ||| ||||| ||| Sbjct 24295 CTTACCGGCACCGTTGGGGCCGATGACAGCAATACGCGAGGCGAGCGA-------GCACG 24347 Query 319229 TCACGTTG---TCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 |||||||| ||| ||| | || || || || |||| | || || | Sbjct 24348 TCACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAG-CAGTTC 24406 Query 319283 GT-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCG 319338 || || ||||| ||| || | ||| | ||| | | ||||| || ||||| Sbjct 24407 GTCAGACGAATGATCGGCTTACCCTTGTTCTTA---ATATCGGCAAGGAAACCAGGCTCA 24463 Query 319339 GGGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 24464 GGGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGC 24520 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || ||| |||||||| || || || ||||||||| |||||||||| |||| || Sbjct 24521 TTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTTC---TCA 24577 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||||| || | ||||||||| ||||||||||| |||||||| | Sbjct 24578 TAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCGGAGTCGTGCGACACAATGAGC 24637 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 | | |||| | | ||| | | ||||| || | |||| | ||||| |||| Sbjct 24638 GAAGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCC 24697 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | ||||| |||||||| |||||||| || | | || |||| |||||| ||||| || Sbjct 24698 AAGTGGTTCGTCGGCTCATCAAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCC 24757 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 | | || ||||| ||||| || || | |||| | |||| |||| || Sbjct 24758 AACTCAAGCTTCATCTTCCAACCACCCG--AGAGGGCACCGACAGGCA---TGGC-CTGC 24811 Query 319696 ATATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAA 319747 || || ||||| || || ||| | || || || || ||||| | | | Sbjct 24812 ATCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---A 24866 Query 319748 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 ||| ||| | || ||| | |||||||| |||| | | || || Sbjct 24867 GGTT---CTTAAGAGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCCT 24923 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 319867 | | ||| | ||| || ||| | | || |||| ||||| | ||||| || | Sbjct 24924 CAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTCAGCTCATCCTGCGTAGGGAAGCCCT 24983 Query 319868 CAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCAC 319927 | |||||||||||| || |||||||| || || || || || ||||| || || | Sbjct 24984 CGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTGCCGCAACCGTTCGGGCCGC 25043 Query 319928 ACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTC 319987 ||||||||||||||| || || || ||| | || | ||||||||| ||||| | | Sbjct 25044 ACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 25103 Query 319988 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 |||| || || || || || || || | || |||||| Sbjct 25104 CACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 25141 >seq9 Length=143240 Score = 123 bits (136), Expect = 5e-23 Identities = 556/866 (64%), Gaps = 30/866 (3%) Strand=Plus/Minus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| | ||| ||||| | |||||||||||||| | ||| | |||||| Sbjct 120654 TTCCCGATCCAGGAGAACGAGGTGTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGG 120595 Query 229819 ACCACTGAGGAAGTTC---CTC-TGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAA 229874 ||| | ||||| | || ||| || ||| || || || ||| | || |||| Sbjct 120594 ACCGCCGAGGA-GATCGATCTCGTGCACG---ACCTCAAGGATTGGGGC---AACCTCAC 120542 Query 229875 TGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTAT 229934 ||| |||| || || || ||||| ||| |||| | || ||||| | ||| ||||| Sbjct 120541 GGACAACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTCTTCGCGGCGAGCGACGGTAT 120482 Query 229935 TGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994 || | || || || || ||||| || || || |||||| ||||| || Sbjct 120481 CGTCAACGAGAACCTCGCGATGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTG 120422 Query 229995 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGC 230050 || |||| | ||| | |||| | ||| ||||| || || || | |||| Sbjct 120421 CTTCTATGGCTTCCAGATCGCCATTGA--GAAC--ATCCACTCGGAGGTGTACTCGCTGC 120366 Query 230051 TTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 | || || || || ||| || || |||| | ||| | |||||| || | Sbjct 120365 TCATTGATACGTACATCAAGGACCAGACGGAGAAGAACCACCTTCTCCGTGCCATCGAGA 120306 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 ||| || || || || ||||| | ||||| | || ||| || | | Sbjct 120305 CCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCG 120246 Query 230171 CG---TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227 || ||||| ||||| | ||||| | | ||||| || ||| | || || || Sbjct 120245 CGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCT 120186 Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 |||||| ||||||| ||||| ||| ||| | |||||||||||| | | || | Sbjct 120185 CGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGA 120126 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347 ||||| ||||| || || ||||| ||||| | |||| || |||| || | Sbjct 120125 ACGAGCTCATCTCGCGTGATGAGGGCCTCCACTGTGACTTCGCTTGCCTGCTGTACTCCA 120066 Query 230348 AGCTCCAGAACAAGCTACC--ATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 |||| |||||||| || | ||| | || | | |||||| || || || | Sbjct 120065 AGCTTGTCAACAAGCTCCCGGAGTCGCGCA--TCCATGAGATCATTCGCGATGCCGTCGC 120008 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464 | || ||||||||| | ||| | |||| |||| || || ||||||||| | Sbjct 120007 GATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCG-GTCGAGCTGATCGGCATGAACTCGT 119949 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 |||||| | ||||||||||| ||| ||||| ||| | | ||| |||||| || Sbjct 119948 CGCTTATGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCATGCGCTTGGTGTCG 119889 Query 230525 AGAAAGTGTACAAC-TCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 || | ||||| ||| |||||| |||| | ||||| | || ||||| || || Sbjct 119888 CCAAGATTTACAAGGTCTC-GAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGC 119830 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||||||||| ||||| || Sbjct 119829 AAGACCAACTTCTTCGAGAAGCGCGT 119804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057671890528490