Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 322 5e-83 seq1222 145 8e-30 >seq9 Length=143240 Score = 322 bits (356), Expect = 5e-83 Identities = 599/866 (69%), Gaps = 24/866 (3%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || ||||||||| ||| |||||| | ||||| || || | || Sbjct 120693 GAGCCGTTCCTCATCGAGAACCCGAACCGTTTCGTGCTCTTCCCGATCCAGGAGAACGAG 120634 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 |||||| |||||||| ||||| |||||| |||||||||| ||||||| | || || Sbjct 120633 GTGTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTC 120574 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || || |||| | | | |||||||||||||| || |||||||| Sbjct 120573 GTGCACGACCTCAAG-GATTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCA 120515 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTT 116813 ||| || || || ||||| || |||||||| |||||||||||||| || | ||| | | Sbjct 120514 CGTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCG-CGATGAACT 120456 Query 116814 TCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || ||| ||||||||||| | |||||||| |||||||| ||||| ||||||||||| Sbjct 120455 TCAG-CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATT 120397 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||| |||| ||| ||||| || |||||| | | | || Sbjct 120396 GAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGATACGTACATCAAGGACCAGACG 120337 Query 116930 GAGGAGAAGCTCCGTTT--GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 ||| |||| | || | | || ||||||||||| || || ||||| | |||||| Sbjct 120336 GAGAAGAACCACCTTCTCCGT-----GCCATCGAGACCATTCCATGCGTGCAGAAGAAGG 120282 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | | |||||||| ||| || | | || || || | |||||| | || | Sbjct 120281 CGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCG 120222 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| ||||| |||||| | ||||| |||||| ||| | |||| || ||||||| Sbjct 120221 CGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCA 120162 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || |||||||| ||||| | ||| |||||||||||||| | || |||| Sbjct 120161 AGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGG 120102 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCG 117224 | || || || ||||| || || ||||| | ||||| | | ||| ||| | Sbjct 120101 GCCTCCACTGTGACTTCGCTTGCCTGCTGTACTCCAAGCTTGTCAACAAGCTCCCG---G 120045 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | ||||| || |||||| | ||| || ||||| || ||| || ||| || | Sbjct 120044 AGTCGCGCATCCATGAGATCATTCGCGATGCCGTCGCGATTGAGAAGGAGTTCGTCCAGG 119985 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343 | |||| ||||| ||| | || | || | || | |||| || ||||||||| Sbjct 119984 ACTCGCTTCCGGTCGAGCTGATCGGCATGAACT-CGTCGCTTATGTGCCAGTACATCGAG 119926 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 ||| |||||| | || || | | ||| | | ||||||| ||||| | ||| Sbjct 119925 TTCTGCGCCGATCGCCTCCTCCATGCGCTTGGTGTCGCCAAGATTTACAAGGTCTCGAAC 119866 Query 117404 CCGCTGGACTTTATGAACCTCATCTC 117429 ||| | |||| ||| || | ||||| Sbjct 119865 CCGTTTGACTGGATGGACATGATCTC 119840 >seq1222 Length=6011 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || || || ||||| || ||||| |||||||||| | | | Sbjct 1984 TGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCGG 2043 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||||| | | | ||||| | || || | ||||| ||||| ||||| |||| |||| Sbjct 2044 ACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAGC 2103 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | || || |||| ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 2104 AGCGCCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACA 2163 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||| | |||||||| || ||| | ||| || | || || ||| Sbjct 2164 TCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 2213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515146921186480