Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2426 170 2e-37 seq1222 125 6e-24 >seq2426 Length=2661 Score = 170 bits (188), Expect = 2e-37 Identities = 533/818 (65%), Gaps = 18/818 (2%) Strand=Plus/Minus Query 132915 GTGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTC 132974 ||||||| || ||||||||||| || || |||| ||||||||| ||||| ||| | Sbjct 2510 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 2451 Query 132975 GACACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATG 133034 | || | | || || || |||| | || ||||| || ||||| ||| Sbjct 2450 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 2391 Query 133035 AAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTC 133094 | | | ||||| |||||||||| | | | ||| ||||||||||| | ||| Sbjct 2390 TAGGCGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGCTTGATCTCCCACACGGTC 2331 Query 133095 TTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCG 133154 ||| | | ||| || | || || || | ||||||||| || |||| ||| Sbjct 2330 TTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGTCG 2271 Query 133155 GCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACG 133214 | |||| |||||||| || || || | ||| |||| ||||| ||| | || | | Sbjct 2270 TGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATG 2211 Query 133215 AGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGA 133273 || |||| ||| || | | |||| |||||||||||| ||||| | | || | || | Sbjct 2210 AGGTACTTGTTCACGATCGTGAA-CTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGT 2152 Query 133274 CGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCAT 133333 ||||||||| |||| || |||||||||||||| |||||||| |||| |||||| ||||| Sbjct 2151 CGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCAT 2092 Query 133334 GTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTT 133393 ||| | || || ||||| | |||||||||| | | | || | || Sbjct 2091 CGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGC 2032 Query 133394 CCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATG 133453 ||||||||| ||| |||| || | | || | | ||| || || Sbjct 2031 CCAGTCCCAGAGA-----------CCCGACGTCG-GCGTGACGCCCCACATGTCGAACTG 1984 Query 133454 CAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTG-G 133512 || || ||| ||||||| || || ||| | || || || || | | | Sbjct 1983 GAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCC-ATGCTCCCGCG 1925 Query 133513 CCAGCTCGCAGCTA-GCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTG 133571 | ||||| || | | ||||||| ||| ||||||| | || || ||| | |||| Sbjct 1924 CGAGCTC-CATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTG 1866 Query 133572 ACGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| |||||||| ||| | ||| | | | || | |||||||| || | | Sbjct 1865 AGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGA 1806 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 ||||| | ||||| |||||| || || || ||||| | ||| | ||||| | Sbjct 1805 CCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCGGGGATC 1746 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 || |||| ||||| |||||||| |||||| || ||||| Sbjct 1745 GGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCG 1708 >seq1222 Length=6011 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| || | ||||| ||||| Sbjct 2192 CACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 2133 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| |||| || ||||||||||| ||||| || ||||||||||| Sbjct 2132 GAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTG 2073 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | ||| || Sbjct 2072 GATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTT 2013 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 |||||||||||| || || || ||||||| Sbjct 2012 GCCGGTCAGAGTCTTGACGAAGATCTGCA 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433771060542316