Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2426 304 3e-77 seq518 145 2e-29 seq9 87.8 4e-12 >seq2426 Length=2661 Score = 304 bits (336), Expect = 3e-77 Identities = 893/1357 (66%), Gaps = 63/1357 (5%) Strand=Plus/Plus Query 248417 CCATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGG 248476 |||||||| | |||||| ||||| ||| || |||| |||||||| ||| ||| Sbjct 284 CCATGTACGTGGTCAAGCGCGACGGCCGCCGCGAGGACGTCAAGTTCGACAAGATCACGG 343 Query 248477 CGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCG 248536 ||||||||| |||||||| || || || | || |||| || || | | ||| Sbjct 344 CGCGCATCACCAAGCTCTGCTACGGGCTCAACGCCGACTTTGTGGACCCGATCAAGATCT 403 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | ||||||||| | || || || ||| | || || || | | Sbjct 404 CGCAGAAGGTCGTGGCCGGCGTCTACCCGGGCGTGACGACGTCTGAGCTCGATGAGCTCG 463 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCT-GCTGGCCGG 248654 | || ||||| ||||||||| |||| ||| |||||||||| | || ||| || | Sbjct 464 CGGCCGAGACCGCGGCGTACTGCGCGAC-GCAGCACCCCGACTT-TAGCAAGCTCGCGGC 521 Query 248655 GAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGG- 248713 | | ||| | |||| | || ||||| | || || || ||| || | ||| | Sbjct 522 GCGCATCTCGATCTCGAACCTGCACAAGAACACCAACAAGCTCTTCTCGGAGAACATTGA 581 Query 248714 -CTGACCT------ACATGC-CTA------TGG------------GATGGTCGCCGATGA 248747 ||| | ||| || | | ||| | || |||| || || Sbjct 582 GCTGTTCGCGCAGAACAAGCACGAGAAGACTGGACTGCCCGCGCCGCTGATCGCAGAGGA 641 Query 248748 CGTCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGG 248804 |||| || | | |||| || |||| | ||| ||| || ||||| | ||| Sbjct 642 CGTCTACCAGATCATCATGGAGCACAAGG---ACCGCCTCAACTCGGCGATCATCCACGA 698 Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 | || || |||||||| | ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 699 CCGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTCCG 758 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | | |||||| ||| ||| || ||||| ||| | |||| || || ||||| || Sbjct 759 CGTCGGCGGCAAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCGGTCGGCAT 818 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGAT 248984 |||||| | ||||| || || ||||||||||||| ||| || ||| | Sbjct 819 CCACAAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTT 878 Query 248985 GACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTG 249044 || || || || |||||||| |||||||| || || | |||||| ||||| Sbjct 879 CACGCACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTG 938 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| || || |||||| | |||||||| |||| ||||| || |||||||| || ||| Sbjct 939 CTTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTG 998 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 ||| || || || | || ||||| ||||| || ||| ||||||||| |||| Sbjct 999 CGCGTGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGAC 1058 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT-GGTATCGTACCCCTCCTTCGAT 249223 ||||||||| || || || || || || || |||| ||| | || || Sbjct 1059 CAACTCGTACATCCGCGGCACGAACGGC-TCGTCGAACGGCCTCGTGCCCATGCTGCGCG 1117 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCG 249280 ||| | ||| || | | | || |||||| ||| || || ||||| ||||||| Sbjct 1118 TCTTCAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCG 1177 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 | ||||| |||| |||||||||||| || || |||||||||||| | || |||||| Sbjct 1178 CGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACC 1237 Query 249341 ACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGT 249400 ||||||||||||| | |||||||| |||||||||| ||||| || |||| | | Sbjct 1238 ACGGCAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCT 1297 Query 249401 TCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGG 249460 ||||| |||||| ||||| ||||||| |||| || | | ||| ||| || |||| Sbjct 1298 TCATGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGG 1357 Query 249461 ACCTC--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATC 249515 ||| ||| | |||| ||| |||| | || || || | | ||||| Sbjct 1358 GGCTCTACACGACGT--GGGGCGACGAGTTCG---AGGCGCTGTACCACCAGTACGAGCG 1412 Query 249516 CAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGA 249569 | | ||| || ||||||| ||| || | | || || |||| | | || Sbjct 1413 CGAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGA 1469 Query 249570 GTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAG 249629 ||| ||||| |||||||| |||||| ||| ||| ||| |||||||| |||| Sbjct 1470 GTCGCAGATCGAGACAGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTC 1529 Query 249630 TAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAAT 249688 ||||| | | | || || || ||||||||| || ||||| ||| |||||| | | | Sbjct 1530 GAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTCGAGT 1588 Query 249689 ACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || |||| || ||| | || || |||||||| || Sbjct 1589 ACACGTCGCCCGATGAGGTCGCGGTGTGCAACCTCGC 1625 >seq518 Length=13654 Score = 145 bits (160), Expect = 2e-29 Identities = 260/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| | || ||||| || || ||||||||||| |||||| | || | || ||| Sbjct 12395 TGCTGTTCTATGGACCTCCAGGCACCGGCAAGACGTCGACCATCGTCGCTGTCGCGCGAC 12336 Query 254071 CCCTGTTGGGC---GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACG 254127 || | ||| || || || | ||| | |||||||||||||| || |||| Sbjct 12335 AGCTTTACGGCCCCGACTTCCGCAAGAACGGGCGGTTTCTCGAGCTGAACGCCTCGGACG 12276 Query 254128 AACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGT 254187 | ||||| | | ||||| ||||| || |||||| ||| | || |||| | Sbjct 12275 ATCGCGGTATCAAGGTCGTGCGCGAGAAAGTCAAGAGCTTCGCGCAGGGCGCGATCA-GC 12217 Query 254188 CGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGA 254247 | ||| || | || ||||| |||||| || | | ||||||||||| ||| | |||| Sbjct 12216 AGCTCCT-CCAGTATG-CCGCCGTTCAAGATCATCGTGCTGGACGAGGCCGACTCGATGA 12159 Query 254248 CGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTT 254307 | | ||| |||||||| || || ||||| | |||||| | ||||| || ||||| | Sbjct 12158 CAGGCGATGCGCAGTCGGCGCTGCGCCGCATGATGGAAAACTACTCCAAGGTCACGCGCT 12099 Query 254308 TTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGC 254365 | ||||| | || |||||||| |||| | |||| | ||| | || || || ||||| Sbjct 12098 TCTGCCTCATTTGTAACTACGTCAGTCGCA--TCATTGAGCCGATCGCGTCGCGTTGCGC 12041 Query 254366 CAAGTTTCGATTC 254378 ||||||||||||| Sbjct 12040 CAAGTTTCGATTC 12028 >seq9 Length=143240 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| | || | ||||| || ||||||||||| |||||||| Sbjct 119780 ACGCCGGCCTTGGAGTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGC 119839 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCG 157354 || |||||||||||||| || || ||||| | | ||||| | |||| || Sbjct 119840 GAGATCATGTCCATCCAGTCAAACGGGTTCGAGACCTTGTAAATCTTGGCG 119890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073611998096064