Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2426 504 6e-138 seq1222 109 5e-19 >seq2426 Length=2661 Score = 504 bits (558), Expect = 6e-138 Identities = 1273/1907 (67%), Gaps = 42/1907 (2%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 ||||| |||||| || || ||||| || |||| || |||| ||||| || || || Sbjct 2556 GGCGGCCTTGTCGACCGTGAACTGAATCGCGTCGGCCTTCGGTCGCGTGCGCAGGTAGTA 2497 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATA 22218 |||||||||||| |||||| ||||||||||||| || || || ||||||| || | Sbjct 2496 CATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT 2437 Query 22219 ACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATC 22278 ||||| | |||| ||| |||| |||||| ||||| ||| | || || || || Sbjct 2436 CGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTC 2377 Query 22279 GGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 |||||||| | | || | | | || ||||| |||||||||||| | | | Sbjct 2376 AGCGGCCATGTCAAGCACAGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTT 2317 Query 22339 GATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAAT 22397 | | ||| ||| | || | | ||| || || |||| | ||| | |||| | Sbjct 2316 CACGGCGTCCGGGATC-ACGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGT 2258 Query 22398 TTTTAA--TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455 | | ||| ||| ||| | |||| || | | || || | || | ||| Sbjct 2257 TGCGCACCTCGGG-CGT-CCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTT 2200 Query 22456 CACCA-CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTT 22514 ||| | | |||| |||||||| | |||||||| | ||| ||||||| |||||||| | Sbjct 2199 CACGATCGTGAA-CTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCT 2141 Query 22515 CGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACA 22574 ||| || || ||||| || || ||||| || ||||| || |||||||||||||| | || Sbjct 2140 CGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCA 2081 Query 22575 GTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACA 22634 | |||||||| | || ||||| || | | | ||||||| | ||||||||| | Sbjct 2080 GCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGA 2021 Query 22635 GATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 || | || |||||| || | ||||||| ||| | || || | ||| ||| | | Sbjct 2020 GACCCGACGTCGGCGTGAC---GCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGG 1964 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCAT-ATATCGCGGCAAGTTCGCAGC-TCGCCTC 22749 | || ||||| | ||||||| |||| | ||| || || || || | ||||| Sbjct 1963 GCGAACCCTCGTAGCTGCCGTACGGGCCATGCTCCCGC-GCGAGCTC-CATCGAGGCCTC 1906 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCT 22809 || ||||| | || | ||||||||||| |||||||| | ||| ||| || |||| Sbjct 1905 CATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCT 1846 Query 22810 TTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 ||| || || || | ||| | | |||||||||||| | |||||| ||||| || |||| Sbjct 1845 CTCGAAC-GCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGA 1787 Query 22869 TCGGTCGGTTTTTCAGATT-CGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCG 22927 |||| |||| ||| || | | | | |||||||| | || || | || ||| Sbjct 1786 TCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCGGGGATCGGGTAGTAGTTGATGTCG 1728 Query 22928 ATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCG 22987 || |||||| ||| | || || | || || || | ||||| Sbjct 1727 ATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTTGAAGTC- 1669 Query 22988 TAAACGCCCGATTGT--ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 ||| | | | || ||||||||| | ||||| || || || ||||| || | Sbjct 1668 -AAAGGTCTTGTCGTCGGTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCG 1610 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | ||||| || ||||||||||| | | ||| || || ||||| | |||| Sbjct 1609 CGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCG 1550 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||| | || |||||| || || |||||||| |||||||| ||||||||||||| Sbjct 1549 TGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCG 1490 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 |||| ||||||| ||||||||||| |||||| ||| | ||| ||| | | |||| Sbjct 1489 TGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA-TCGTC 1431 Query 23226 GCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 || | | ||| || |||||||| ||||||| ||| || || ||| | || | Sbjct 1430 TTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCA- 1372 Query 23285 CAGTC--GGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 ||| | || || |||| | |||| || | || |||||| || | Sbjct 1371 -CGTCGTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCT 1313 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 | ||||| |||| || ||||| || ||||| | |||||||| || || || ||||| Sbjct 1312 CGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGT 1253 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 | ||| |||||| |||||| || | |||| || || || | ||| || ||||||| Sbjct 1252 GCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACG 1193 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||| ||||| | || |||| |||| | ||| ||||||||| |||||||| || | Sbjct 1192 GCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCG 1133 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG-CCC 23581 |||||| |||| | || | ||||| |||||||| ||||| |||| |||| | || || Sbjct 1132 CCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCG--TTCGTGCC 1075 Query 23582 GC-CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||| | || || | |||||| ||| || || ||||| || || | Sbjct 1074 GCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCA 1015 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || || |||||| || || || |||||||||||||||||||| ||| || || Sbjct 1014 CTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTT 955 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||| || ||| ||||| |||| |||| ||||| | || |||||| || Sbjct 954 CATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGT 895 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| | |||||||| ||| | | | |||||| | |||||| |||| ||||| || Sbjct 894 CGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTC 835 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---C 23877 |||||| | ||| || |||| ||||| |||| ||||| | || || | || | Sbjct 834 AATGTCGTGCTTGTGGATGCCGACCGCGACACGCAGAATCATCTGCTGCGGACGCTCCGC 775 Query 23878 GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 |||| || ||||| | || || || || | | ||| || || ||||| || Sbjct 774 GACCTTGCCGCCG---ACGCGGAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 718 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 ||| || | |||||| || ||||| | || ||||| || | |||| Sbjct 717 GTCGTACTCAAAGTCGCGGTCGTGGATGATCGCCGAGTTGAGGCGGT 671 >seq1222 Length=6011 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| || ||||| ||||||||||| ||||| |||||||| ||||||| || || || | Sbjct 1984 TGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCGG 2043 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 |||| | || | ||||| |||| || ||||||||| || | || || || |||| Sbjct 2044 ACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAGC 2103 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||| || || |||||||| || ||| | || ||| Sbjct 2104 AGCGCCTGATCTTCGCTGGTAAGCAGCTCGAGGAC 2138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445703864546160