Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 179 5e-40 seq674 123 4e-23 seq2426 104 3e-17 >seq9 Length=143240 Score = 179 bits (198), Expect = 5e-40 Identities = 588/891 (66%), Gaps = 56/891 (6%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTC 125080 ||| | |||||||| |||||| |||| ||| ||||| | ||| ||| ||||||| || Sbjct 120630 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCGTG 120571 Query 125081 CAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || | |||| | ||||||| | | | || || | ||||| | ||||| ||| Sbjct 120570 CACG-ACCTCAAGGATTGGGGCAACC---TCACGGACAACGAGCGCCACTTTATCAAGCA 120515 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT---GTTGACACG 125197 | | | || ||||| || | ||| || ||||||||||| || || | ||| || Sbjct 120514 CGTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGA-AC- 120457 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| || |||| |||| | ||||| || || ||||| ||| || Sbjct 120456 -TTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCAT 120398 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314 ||||||| | |||||||| ||||||| || ||||| | |||||| || | | Sbjct 120397 TGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGATACGTACATCAAGGACCAGAC 120338 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | | || ||| | ||| | || ||||| || | || | | | || ||||| Sbjct 120337 GGAGAAGAACCACCTTCTCCGT---GCCATCGAGACCATTCCATGCGTGCAGAAGAAGGC 120281 Query 125375 TCAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || |||| | | |||| ||| | || | | | | | || || | | || | Sbjct 120280 GCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCG-CGGCTTTTGCTGAGCGCATTGTCG 120222 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTC 125492 | ||||| ||||| |||||||| ||||| ||||| | ||| ||| ||||||| |||||| Sbjct 120221 CGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCT-CCATCTTCTGGCTC 120163 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || |||||||| || || | | |||||| | || || || || ||| Sbjct 120162 AAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAG 120103 Query 125553 GGCCTACACTGTGACT----TTGCC-ATTCTACT----GTTTCGCAACTATCTGCGTCCC 125603 ||||| |||||||||| ||||| | |||| | || |||| | || || Sbjct 120102 GGCCTCCACTGTGACTTCGCTTGCCTGCTGTACTCCAAGCTTGTCAACAA---GCTCCCG 120046 Query 125604 GAGT-GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 |||| || |||| ||| || |||| | | ||||||||| ||| || Sbjct 120045 GAGTCGCGCATCC----ATG---AGATCAT-----TCG----CGATGCCGTCGCGATTGA 120002 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAAGCTAA 125721 | ||||| | || || || |||||| ||| |||| |||||||||| ||| | Sbjct 120001 GAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGC-TGATCGGCATGAACTCGTCGCTTA 119943 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA 125781 ||||| ||||||| ||||| || ||||| || || | | | | || | ||||| Sbjct 119942 TGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCATGCGCTTGGTGTCGCCAAGA 119883 Query 125782 TTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCA 125841 ||||||| | | ||| || ||||| | ||| || || || || |||| ||||||| Sbjct 119882 TTTACAAGGTCTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCA 119823 Query 125842 ACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTACGGTGTCGGTGT 125890 |||| ||||||||| || ||||||| | || || ||| |||||||| Sbjct 119822 ACTTCTTCGAGAAGCGCGTTGGCGAGTACTCCAAGGC--CGGCGTCGGTGT 119774 >seq674 Length=10591 Score = 123 bits (136), Expect = 4e-23 Identities = 221/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCC-GTCGGGCAGATCGAGTCCCATGATTCTACCGTGCG 127501 ||| |||||||| ||||||||||| | |||| |||||||| |||||||| | |||||| Sbjct 2485 GAAACCGTGCGTGAGGTGGCCTCCAGACGGG-AGATCGAGACCCATGATGCGGTCGTGCG 2427 Query 127502 GTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACAC 127561 | | || || ||||| ||||||||||||||| ||| |||||||| || || Sbjct 2426 GGCGCAGGAGACCCGTGTAGACGGCAAAGTTGGCCGGGCTGCCAGAGTACGGCTGCACGT 2367 Query 127562 ACACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTA 127618 || ||||| |||| ||| || |||| |||| |||||||| | Sbjct 2366 TGACGCCCCACTTCTCGGGGTCGAGGCCAT---ACGCCTTGAGCGCGCGCTGCTGGCAGA 2310 Query 127619 GCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCT 127678 || ||||| ||||||| | |||||| ||||||||||| |||| ||| ||||| Sbjct 2309 TCACCTCGATCTGATCGATGACCTCGTTGCCACCATAGTAGCGCTGGTGCGGCAGACCCT 2250 Query 127679 CCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGT 127738 | | |||||||||| | || ||||| | || || || || | | | ||| |||| Sbjct 2249 CGGCGTACTTGTTGGTCAGGCACGAGCCCAGACACTCCATGACGGCGCGCGAGGTGAAGT 2190 Query 127739 TTTCCGATGCGATCAACTC 127757 | || || || |||| ||| Sbjct 2189 TCTCGGACGCAATCAGCTC 2171 >seq2426 Length=2661 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || ||||| || ||| | || Sbjct 2326 TACAAGACCGTGTGGGAGATCAAGCAGAAGGCTGTGCTTGACATGGCCGCTGACCGCGGC 2385 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||| || ||| |||| || || | || ||||| || ||| Sbjct 2386 GCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCACATCGCGGAGCCGACGATCAGCAAG 2445 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| ||| Sbjct 2446 CTGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTG 2505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740955238657480