Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq126 178 2e-40 seq6304 170 3e-38 seq293 114 2e-21 seq2081 84.2 3e-12 >seq126 Length=35573 Score = 178 bits (196), Expect = 2e-40 Identities = 208/280 (74%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 14383 CGCCAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 14442 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| || |||||| |||| || | |||| || |||| Sbjct 14443 CCGCCGTCTCGCTCGCCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 14502 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| ||||||| ||| ||| |||| || | || || || || Sbjct 14503 TCGCGGTGTCCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCGGTCACGTACACGGA 14562 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| |||||| |||||||| | ||||| || |||| ||||| || Sbjct 14563 GCATGCCCGTCGCAAGACCGTCACCGCCATGGATGTTGTCTACGCTCTGAAGCGTCAGGG 14622 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT-AATCTTCTAATCA 16710 ||||| | || || || || ||| ||||||| ||||| Sbjct 14623 CCGTACCCTCTACGGCTTCGGCGGTTAAATCTTCAAATCA 14662 >seq6304 Length=691 Score = 170 bits (188), Expect = 3e-38 Identities = 202/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 456 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 397 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 396 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 337 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| || | ||| | | ||| || || Sbjct 336 GCGCGGCGTGCTCAAGGTCTTCCTTGAGAACGTCATTCGTGACTCGGTGACCTACACGGA 277 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 276 GCACGCGCGCCGCAAGACGGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 217 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 216 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 183 >seq293 Length=20481 Score = 114 bits (126), Expect = 2e-21 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16465 CATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCG 16524 |||||| || ||||| ||||| || || || ||||| ||||| || ||||| |||||||| Sbjct 10701 CATCCAGGGCATCACGAAGCCGGCGATTCGCCGTCTCGCTCGCCGAGGTGGTGTCAAGCG 10760 Query 16525 TGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || ||| | |||| || |||| || | ||| | ||| | |||||| ||| ||| Sbjct 10761 CATCAGTGGTCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGT 10820 Query 16585 TATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 |||| ||| | || || || ||||| || || ||||||||||| | ||||| Sbjct 10821 GATCCGCGATTCGGTCACGTACACGGAGCATGCGCGCCGCAAGACTGTCACGGCGATGGA 10880 Query 16645 TATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 | ||||||| || | || || || || || | | | || || ||||| ||||| | || Sbjct 10881 TGTCGTCTACGCGCTCAAGCGACAGGGACGCACGCTCTACGGCTTTGGTGGTTAAGCATC 10940 Query 16705 T 16705 | Sbjct 10941 T 10941 >seq2081 Length=3328 Score = 84.2 bits (92), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 16569 TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGA 16628 ||||||| ||| ||| |||| || | || ||||| ||||| || || |||| Sbjct 2 TCTTCCTTGAGAACGTCATCCGCGACTCGGTCACGTATACGGAGCATGCCCGTCGCAAGA 61 Query 16629 CTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTT 16688 |||||||| |||||||| ||||||| || |||| ||||| ||||||| | || |||| Sbjct 62 CTGTCACCGCCATGGATGTCGTCTACGCTCTGAAGCGTCAGGGCCGTACCCTCTACGGTT 121 Query 16689 TTGGAAGTT-AATCTTCTAATCA 16710 | || ||| ||||||| |||| Sbjct 122 TCGGCGGTTAAATCTTCATATCA 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064938732539