Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2426 318 6e-82 seq1222 138 1e-27 >seq2426 Length=2661 Score = 318 bits (352), Expect = 6e-82 Identities = 1151/1767 (65%), Gaps = 59/1767 (3%) Strand=Plus/Minus Query 144749 GTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGAC 144808 ||||||| |||||||||||||| ||||| ||| ||| | |||| ||| || ||| Sbjct 2510 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 2451 Query 144809 GTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATG 144868 |||| | | ||| |||||||| | || || ||||| ||||| || ||| Sbjct 2450 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 2391 Query 144869 AAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGG 144926 | ||| |||||| |||||||| |||| || | | | ||| || || ||||| ||| Sbjct 2390 TAGGCGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGC--TTGATCTCCCACACGG 2333 Query 144927 TCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT 144986 |||||||| || | | |||||| || || | ||| | ||| || | || Sbjct 2332 TCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGT 2273 Query 144987 -GCGCAA-ATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTC 145044 | | | || ||| || |||| |||| ||| | | | || ||| | || | Sbjct 2272 CGTGGAGGATCTGG--TTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTT 2215 Query 145045 AATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTT 145104 || | ||||| || |||| | ||||||||||| | ||| || || |||| ||| Sbjct 2214 CATGAGGTACTTGTTCACGATCGTGAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTT 2155 Query 145105 AGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGG 145164 | |||||| || || | |||||||| ||||| ||||| || || |||| || || || Sbjct 2154 GGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGG 2095 Query 145165 CATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGT 145224 ||| ||| | || | || ||||||| ||||| || | || | |||| |||| Sbjct 2094 CATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGC 2035 Query 145225 ACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCC 145281 |||| ||||| || ||| |||||| | ||| ||||||||||| |||| || ||||| Sbjct 2034 GGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCC 1975 Query 145282 CTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG-GCGAGCTCGC 145340 || ||| |||| || | || | || || | || | | |||||||| | Sbjct 1974 CTTGCTCACGGGCGAACCCTCGTAGCTGCCGT-ACGGGCCATGCTCCCGCGCGAGCTC-C 1917 Query 145341 AAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC 145399 | | ||||||| ||||| || || | |||||| || | | |||||||| Sbjct 1916 ATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGG 1857 Query 145400 GCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATT 145459 || || ||||||||| ||| || || || | || || || ||||| ||||| | Sbjct 1856 GCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACG 1797 Query 145460 CCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTC---GATAGGATAT 145516 || | |||||| || || || || ||||| | | | | | ||| ||| || || Sbjct 1796 CCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCGGCCTCGGGGATCGGGTAG 1740 Query 145517 CGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAAC 145576 || |||||| | || |||| ||| ||| || ||||| || |||| | | Sbjct 1739 TAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGC 1680 Query 145577 TTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGAC--GGCGATCGACG 145634 || | |||||||| | || ||| || |||| | || | ||| ||||| |||| Sbjct 1679 TTCTTGAAGTCAAA---GGTCTTGTCGTCGGTCACA-AACT-TGGACAGCGCGATGGACG 1625 Query 145635 CCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAA 145693 | | || || || || ||| || |||| || |||| | | | |||| ||| | Sbjct 1624 CGAGGTTGCACACCGCGACCTCATCGGGCGACG-TGTACTCGAGCACCTCGCAGCAGAGG 1566 Query 145694 TTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTG 145753 ||||| | ||| || || || || ||||| || || | |||||||| ||||||| Sbjct 1565 TTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTG 1506 Query 145754 TAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAG 145810 || ||||||||||| ||| ||||| | ||||| ||| | ||| || | | || Sbjct 1505 TACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGC--- 1449 Query 145811 TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCC 145870 | |||||| || | | || | ||||||||| ||||| | ||| ||| || Sbjct 1448 TGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCC 1389 Query 145871 TCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGAC 145930 || ||| || || | | | || || || || ||| || || | ||| | Sbjct 1388 TCGAACTCGTCGCCCCACGTCGTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTC 1329 Query 145931 CATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATC 145990 || |||||||||| | |||||||| ||| || | ||| || | ||||| |||||| | Sbjct 1328 CACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAG 1269 Query 145991 AAGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC-GCTTCAAATTAAGCACACT- 146046 | | ||||||| |||| ||| | || || ||| ||| | | || | ||| Sbjct 1268 AGATCACGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTCTTGAGGTCCAGGA-ACTC 1213 Query 146047 ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCC 146103 ||||||| ||||||||||| || | || | |||| | || || || || ||| Sbjct 1212 GAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCC 1153 Query 146104 ACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCT 146163 |||||||| |||| || || ||| ||| |||||||||| ||||||| ||| |||| | Sbjct 1152 GCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTT 1093 Query 146164 GGCTACGCCGTTCGT--AGAGTTTATTCTGGT--GCCGCGGGAGCGCACGCAATGAACAT 146219 | ||||||||| | | | | | || | ||| ||| | | || || Sbjct 1092 CGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGC----GCGGATGTTGTGCACGC 1037 Query 146220 TCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGA 146279 | ||||||| ||||| | ||||||| || ||||| | |||||| ||||||| Sbjct 1036 TGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGA 977 Query 146280 TGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCAT 146337 |||| || || ||| |||| ||| ||||||| |||||||| ||| ||||| Sbjct 976 TGCCCTCGATCGAGTCGTCCTTC--ATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCG 919 Query 146338 CGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCAT 146397 |||||| ||||| ||||| |||||| |||||||||| || | || | ||| Sbjct 918 CGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTA 859 Query 146398 CCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCAT 146457 | ||||| |||| ||| | | |||||||| || ||||| | ||||| |||| Sbjct 858 CTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACCGCGACACGCAG 799 Query 146458 GAGCATGTGTTGGGGCCGCTCCGCCAC 146484 | ||| || || || |||||||| || Sbjct 798 AATCATCTGCTGCGGACGCTCCGCGAC 772 >seq1222 Length=6011 Score = 138 bits (152), Expect = 1e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 2209 CCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2150 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | |||||||| ||||||||| Sbjct 2149 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGATCCGGAGGG 2090 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 2089 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACG 2030 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 |||| || | || || ||||| ||||| || ||||| ||||||| Sbjct 2029 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCA 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471946582504320