Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq79 96.9 4e-15 seq1467 93.3 5e-14 seq869 93.3 5e-14 seq12 87.8 2e-12 >seq79 Length=46062 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126178 TTGGTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAAC 126237 |||||||||||||| || || | ||| | ||| || || ||| |||| || || || ||| Sbjct 12139 TTGGTGTAAATGTAACGAGGTGATGCTGCATCTTTACCACCCCCCAATCGAGTACCGAAC 12080 Query 126238 TGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTG 126297 ||||||| ||| ||| | || | |||||| |||||| || || ||||| | ||| Sbjct 12079 TGACCGTTCGGAGACAAAAGATGGATGTTGTTGCTTCCCACGAAATCTTGCGCCATGTTG 12020 Query 126298 ACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAG 126357 | || || || || |||||||||| || | || | | || |||| ||| || Sbjct 12019 ATGATCGTGCCGTTGAGACTCTGCTCGCCATGGTGATAAGCAGAATGTTCGGACACATAT 11960 Query 126358 CCGCTCAGCTGCGCAACCTTGAT 126380 ||| ||||| ||||| ||||| Sbjct 11959 CCGGCAAGCTGAGCAACTTTGAT 11937 >seq1467 Length=5004 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | |||||||| ||| || | ||||||||||||| || ||||||||||||||| Sbjct 3986 GTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTGT 4045 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || || | | || | ||| |||||||| || || |||||||||| | ||||| Sbjct 4046 CCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGACG 4105 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCG 126360 || ||| | ||| | ||||||||| | ||| | || ||||| |||||| Sbjct 4106 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTCACTGCAGTAGCCA 4165 Query 126361 CTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 4166 GCGAGCTGCGCGACCTTGA 4184 >seq869 Length=8398 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 3168 ATCTTCATCGGCCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 3109 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||||| ||||| ||| | Sbjct 3108 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCCATGGAGGGTCGTGCGCGA 3049 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 3048 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGAGACTG---TCTGATCTCGCACGGCTCG 2992 Query 15575 ACCCAATTCCTCAACGAGCGC 15595 || | ||||||| || ||| Sbjct 2991 GCCAACTTCCTCATGGACCGC 2971 >seq12 Length=134298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 15365 TCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTATCAC 15424 ||||| | || |||||| ||||| || ||| |||||||| |||| ||||| || Sbjct 51745 TCGGGTATCACGGGCGAACCGATCCTGTGCTACATCTTTATGGGCCCGATCTACTACCAG 51804 Query 15425 CGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAG-GTGACGAC 15483 ||||| |||||||| | |||||||||||||||||| || || | | | | || Sbjct 51805 AAGCTCAAGCACATGGTCATGGACAAGATGCACGCGCGTGCGAGGGGCCCGCGCGCCG-T 51863 Query 15484 GCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAGAT 15543 |||| || ||||| | | || || |||| | ||| ||||| || | || ||||| Sbjct 51864 GCTCACGCGGCAGCCGACCGAGGGCCGCTCGCGCGACGGCGGCCTGCGTCTCGGCGAGAT 51923 Query 15544 GGAAAAGGACTGCATTCTGGT--GC-ACGGCGCCACCCAATTCCTCAACGAGCGCATGTT 15600 ||| ||||| |||| | || ||||||| | | | |||| |||||| | | Sbjct 51924 GGAGCGTGACTG---TCTGATCGGCTACGGCGCGAGCATGCTGCTCATGGAGCGCCTCAT 51980 Query 15601 TCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCGGCATG 15649 || |||||| ||||| | ||||||||| | | |||| ||||| Sbjct 51981 GATCTCGAGTGACGCGTTCACGGCGGACGTGTGCCAGGGCTGCCGCATG 52029 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 15020 GTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GG 15078 || ||||| |||| |||||| ||| ||||||||| ||||||||||| || | | Sbjct 51400 GTCAAGGTGCTCATCCGCCAGACGCGTCGGCCCGAGATCGGCGACAAGTTCAGCAGTCGC 51459 Query 15079 TATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCG- 15137 | ||| || |||||| |||||||| ||| | |||||| |||||||| || | || Sbjct 51460 CACGGC-CAGAAGGGCGTGTGCGGCACGATCCGCAACCAGGAGGACATGCCGTTCAACGA 51518 Query 15138 CGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 || | ||| | |||||| | ||||| ||||| || || ||||| ||||||||| Sbjct 51519 CGAC-GGCGTCTGCCCCGACCTCATCATGAACCCGCACGGCTTCCCGAGCCGCATGAC 51575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611306229344800