Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2426 109 5e-19 seq1222 96.9 3e-15 >seq2426 Length=2661 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 129961 GTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACT 130020 |||| |||| ||||| || ||| || | || |||||| || | || ||||| Sbjct 1367 GTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACG 1308 Query 130021 CGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCC 130080 || ||||| || | |||||| | ||||| ||||| || | ||| ||||| | Sbjct 1307 CGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGC 1248 Query 130081 TCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCA 130140 ||| || ||| || || || ||||| ||| | ||||||||||||||||| || Sbjct 1247 TCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCC 1188 Query 130141 ACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCA 130197 | || || || | | |||||| || || ||| || ||||| |||| |||| | | Sbjct 1187 AGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTG 1128 Query 130198 TTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATG 130257 | |||| |||| |||| ||| | | | | ||||| | || |||||| |||| ||| Sbjct 1127 TCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATG 1068 Query 130258 AAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGAT 130317 | | || || | ||| || ||||| | || |||||||| | | || || Sbjct 1067 TACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAG 1008 Query 130318 ATCAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTT 130376 || ||||||| | || | ||||| || || ||||| |||| ||| || || ||| Sbjct 1007 ATGCACGCGCACT-GCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGC 949 Query 130377 TAGGAGGAAACACGA 130391 || ||||| ||||| Sbjct 948 GAGCAGGAAGCACGA 934 >seq1222 Length=6011 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || || || || ||| | ||||| || ||| |||| || || || || | | | Sbjct 1984 TGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCGG 2043 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | | | | ||| || |||| || || || || ||||||||||| || || || ||||| | Sbjct 2044 ACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAGC 2103 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || || || || || ||| | ||||| ||||||| | || || ||||||| Sbjct 2104 AGCGCCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACA 2163 Query 22400 TTCAAAAAGAATCCAC 22415 | || || || || || Sbjct 2164 TCCAGAAGGAGTCGAC 2179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419670589472995