Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq72 194 3e-44 seq9 147 4e-30 >seq72 Length=48362 Score = 194 bits (214), Expect = 3e-44 Identities = 666/1019 (65%), Gaps = 31/1019 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 25141 GGATCTCTGCAACTGCGAGTTCTCGCTCGCCTACGGTGGTATGATTCTGCTGAACAACGC 25082 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 |||||| | ||||||||||| |||| || ||||| ||| || || || || || Sbjct 25081 CCGCCTTCGCCTCAAGCGTGGCCACCGCTACGGTCTGTGCGGCCCGAACGGTTGCGGCAA 25022 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATC-TG 279528 | || || ||||||||||| | ||||| ||||| || || || |||| |||| || Sbjct 25021 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCGAGGGCTTCCCTA-CGCAGGATG 24963 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGAT-AGCA--CTG 279585 || | | ||| || | || |||||| || || | | | || | ||| | | Sbjct 24962 AGCTGAAGACGGTCTTCGTCGAGCACAACCTCCAGGC---TGAGGAGGCTGAGCTTCCGG 24906 Query 279586 TGTTCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCA 279645 | |||||||| | | |||| | ||| | || | || | | |||||| || Sbjct 24905 TCATCGACTTCATGTTCTGTGACGAGGCTCTTAAG--AACCTGC-CGCGTGAGGAGGTCC 24849 Query 279646 TCCAGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCT 279704 | | || | | || || | | || |||| |||| || ||| | Sbjct 24848 GTGACATGCTCACGAGCGTCGGCTTC-ACGGCCGAGATGCAGGCCATGCCTGTCGGTGCC 24790 Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || ||||||||||||||||||||||| | | | || ||||| || || || ||| Sbjct 24789 CTCTCGGGTGGTTGGAAGATGAAGCTTGAGTTGGCCCGTGCCATGCTCATGAAGGCTGAT 24730 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| || ||||||||||| || |||||| |||| |||||| ||||| | | Sbjct 24729 ATCCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACGTCAAGTGGCTCGAG 24670 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| || || || | ||| || |||| |||||||| || |||||||| || ||| Sbjct 24669 GACTACCTCACGAGCCTCACGAACGTGACTTCGCTCATTGTGTCGCACGACTCCGGTTTC 24610 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCAC 279944 || || | || ||| | |||||| ||||||||| || | ||||| | | || Sbjct 24609 CTCGACACGGTCTGCACGAACATCATCCACTATGAG---AACCGCAAGCTGAAGACGTAC 24553 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGCCGCCTACTATGACC 280002 | || ||||| |||| ||||| ||| || || ||||| | ||||| || | Sbjct 24552 AAGGGTAACCTCTCTGAGTTCGT--CAAGCAGAAGCCGGAGGCCAAGACGTACTACGAGC 24495 Query 280003 TGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCA-TCACA 280061 | ||| || || ||||| ||||||||||| || || || | | | | | | Sbjct 24494 TTGAGGCTGCTGCCTTCAAGTTCACGTTCCCTGAGCCTGGTTTCCTTGCCGATATTAAGA 24435 Query 280062 TCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCC 280121 ||| || || | ||||| || | ||| | || || ||||| | Sbjct 24434 ACAAGGGTAAGC-CGATCATTCGTCTGACGAACTGCTCGTACCAGTACCC---TGGCCGC 24379 Query 280122 AACA--TCTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTC 280175 ||| | || | | ||| ||||| | | || | ||| || |||| |||| Sbjct 24378 GACAAGCCGTCGATCCGTGACATCAACGTGACGTGCTCGCTCGCCTCGCGTATTGCTGTC 24319 Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 || || ||||| ||||| |||||||| || || ||||| | || || || ||| || Sbjct 24318 ATCGGCCCCAACGGTGCCGGTAAGTCGACGCTTATCAAGATGCTTACGGGTGAGGTTGAG 24259 Query 280236 GCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | || | || | || |||||||| || |||||| | || ||||| || |||||| Sbjct 24258 CCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCTACGTTGCCCAGCAC 24199 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 || ||||||||||| ||| | ||||| ||||| || | ||||| ||||| |||||||| Sbjct 24198 GCGTTCCACCACATTGAGGAGCACCTCGACATCACGGCCAACCAGTACATCCAGTGGCG 24140 >seq9 Length=143240 Score = 147 bits (162), Expect = 4e-30 Identities = 533/823 (65%), Gaps = 22/823 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| |||| || ||||| | | Sbjct 119813 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCAAACGGGTTCGAG 119872 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| ||||| || || || ||| || || ||||| | Sbjct 119873 ACCTTGTAAATCTTGGCGACACCAAGCGCATGGAGGAGGCGATCGGCGCAGAACTCGATG 119932 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || ||||||||||| |||| |||| |||| | || || Sbjct 119933 TACTGGCACATAAGCGACGAGTTCATGCCGATCAGCTCGACC-GGAAGCGAGTCCTGGAC 119991 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC-- 251799 ||| ||||| || | || || || || | | || ||| ||| || | Sbjct 119992 GAACTCCTTCTCAATCGCGACGGCATCG----CGAATGATCTCATGGATGCGCGACTCCG 120047 Query 251800 --AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 |||||||| | ||||| |||||||| || | || | ||| || ||||| | Sbjct 120048 GGAGCTTGTTGACAAGCTTGGAGTACAGCAGGCAAGCGAAGTCACAGTGGAGGCCCTCAT 120107 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| |||||| || | | ||||||||||| | ||||| ||| |||||| Sbjct 120108 CACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTCTTGAGCC 120167 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| || || || ||||| | | ||||| || | | || |||| Sbjct 120168 AGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCAACGGCAGCGAACGCGACAA 120227 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCA-TGCTGCCTTC 252033 |||||||||||| | | | |||| | |||| | ||||| ||| |||||| Sbjct 120228 TGCGCTCAGCAAAAGCCGCGCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGC-GCCTTC 120286 Query 252034 TT-TCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 || | || ||| || || || ||||| ||| | || |||| ||| | | || Sbjct 120287 TTCTGCA--CGCATGGAATGGTCTCGATGGCACGGAGAAGGTGGTTCTTCTCCGTCTGGT 120344 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| || ||||| || || ||||||| |||||| |||||| || || | Sbjct 120345 CCTTGATGTACGTATCAATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATGGCGA 120404 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 ||||| | ||||||| |||||| ||| | || || || ||||| | | Sbjct 120405 TCTGGAAGCCATAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCATCG 120464 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || || || ||||| | || ||||| | || | | |||||| | Sbjct 120465 CGAGGTTCTCGTTGACGATACCGTCGCTCGCCGCGAAGAACGCGAGGACGTGCTTGATAA 120524 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 |||| ||||| | ||| |||| ||| | ||| || | ||| || ||| | Sbjct 120525 AGTGGCGCTCGTTGTCCGTGAGGTTG---CCCCAATCCTTGAGGTCGTGCACGAGATCGA 120581 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 || || | |||||||| | | | | |||||||||||||| Sbjct 120582 TCTCCTCGGCGGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 120624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027689002528543