Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2426 554 8e-153 seq9 331 2e-85 >seq2426 Length=2661 Score = 554 bits (614), Expect = 8e-153 Identities = 1168/1725 (68%), Gaps = 59/1725 (3%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 ||||||||||||||| |||||||| || | ||| |||| || |||||||| |||||| Sbjct 2505 CAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAG 2446 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | ||| | | || |||| |||||| ||||||||||| Sbjct 2445 CTTGCTGATCGTCGGCTCCGCGATGT----GCAC--------GTTGAGCGACTGGCTCTG 2398 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | || | ||| |||| || || ||||||||| | | ||||||| ||||| Sbjct 2397 GCAGATGTAGG-CGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGCTTGATCTCCC 2339 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGC 244013 || | |||||||| | ||| | | || |||| | | | |||||||||||||| Sbjct 2338 ACACGGTCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGC 2279 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA--- 244070 | | || | || || |||| |||||| | |||| | ||| | |||| | Sbjct 2278 CGTGGTCGTGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGA---GCTCGATGA 2222 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || ||| | |||| | ||||||| | | ||||| || | ||||||||||| | || Sbjct 2221 GCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCGGCGAGCACGCGGCGGTTGT 2162 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| | ||| ||||||||| ||| ||||||| || |||||||| || || Sbjct 2161 ACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACG 2102 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | |||||||| |||| | |||||| ||| | |||||||| | | || || Sbjct 2101 CCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCT 2042 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||| || ||||||||| | ||||| ||| || ||| |||||||||||| | Sbjct 2041 TGAGCGCGGCCCAGTCCCAGAGACCCGAC--GTCGGCG----TGACGCCCCACATGTCGA 1988 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 |||| | | |||||||| ||||| ||||||||| | ||| || || | | Sbjct 1987 ACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCATGCTCCC 1928 Query 244371 GGGCCAGCTTACAGCTCT-CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 | || |||| || | | || | |||| | |||| | ||||||||||| ||||| Sbjct 1927 GCGCGAGCTC-CATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTG 1869 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 || | |||||||||| | ||| ||| | | |||||| | ||||| |||| || Sbjct 1868 TTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCG 1809 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC 244549 || |||||||||||||||||||| || | ||| ||| |||| |||| ||| ||||| Sbjct 1808 AGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGCTCGGCCTCGGGG 1749 Query 244550 ACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACG 244609 | ||||| ||||| |||||| |||||||| |||||||| |||| | | || | Sbjct 1748 ATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATG 1689 Query 244610 TCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC 244669 ||| ||| || ||||| | | | || |||| |||||||| Sbjct 1688 TCGTAGAGCTTCTTGAAGTCAAAGGTCTTG---TCGTCGG------------TCACAAAC 1644 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | | || |||| | || |||||||| || || ||||| || | ||||||| | Sbjct 1643 TTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCG 1584 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | |||| ||||||||| || | ||| ||||| |||| ||| || || |||||| Sbjct 1583 AGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTG 1524 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||||| | ||||||||| |||||| | ||| || ||||||| ||| | ||||| Sbjct 1523 CGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGG 1464 Query 244850 A-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 | ||| | |||||| | | || || |||| |||| || |||||| |||||| Sbjct 1463 ATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTA 1405 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGCACGACG 244967 || |||||| |||||||||||| ||||| || |||| ||| ||| ||| | || Sbjct 1404 CTGGTGGTACAGCGCCTCGAACTCGTCGCCCC--ACGTCGTGTAGAGCCCCGGCGCCTCG 1347 Query 244968 -CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 |||||| | || |||||||||||| | ||| ||| | || ||||||||| |||||| Sbjct 1346 TTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGG 1287 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||||| | || | |||||| || | | | ||| || ||| ||||||| | Sbjct 1286 ATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTG 1227 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || |||| || || |||| |||| ||||||| ||||||| ||| | |||| | ||| Sbjct 1226 AGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCC 1167 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 |||||| ||| |||||||| || | | | ||||||||| |||||| | Sbjct 1166 TTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATG 1107 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 ||||| | |||||| || |||||| ||||| |||||| | | ||| | | || Sbjct 1106 GGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG---TTGGTCGCGCGG 1050 Query 245267 TTGCTGATGGAC----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTT 245322 || || || || | ||| | ||||| || |||||||||| ||||| ||| Sbjct 1049 ATGTTG-TGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTT 991 Query 245323 GATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGA 245382 || ||||| |||||||| || ||| ||||||| |||||| ||||| || || Sbjct 990 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGA 931 Query 245383 CAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 |||||| |||| || | ||| || ||||||||| || || | ||||| || ||| ||| Sbjct 930 CAGCTGCGGGCGCGGCG-TGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGC 872 Query 245442 GGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGT 245486 ||| | | || ||||||||| |||| ||||| |||| || Sbjct 871 TTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGT 827 >seq9 Length=143240 Score = 331 bits (366), Expect = 2e-85 Identities = 524/739 (71%), Gaps = 19/739 (3%) Strand=Plus/Minus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | || || |||||||| || ||||| || ||||| |||||||| || | Sbjct 120521 TCAAGCACGTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGA 120462 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | |||| | ||||||||| ||||||||| |||||||| ||||||||||| | Sbjct 120461 TGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCG 120402 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGG 42588 |||| |||||| | ||||| ||||||||| | ||||||| | ||||||||| || Sbjct 120401 CCATTGAGAACATCCACTCGGAGGTGTACTCG---CTGCTCATTGATACGTACATCAAGG 120345 Query 42589 ATCCCGTCG-AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 | || | || || ||| || || ||||| ||||| || || ||| | ||||| Sbjct 120344 A-CCAGACGGAGAAGAACCACCTTCTCCGTGCCATCGAGACCATTCCATGCGTGCAGAAG 120286 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 |||||| ||||||||||||| ||| ||| | | ||| | || | ||| | | Sbjct 120285 AAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATT 120226 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || || | ||||| |||||||| |||||||||||| | ||| ||||||||||||| Sbjct 120225 GTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGG 120166 Query 42768 CTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || ||| || ||||| || |||| |||||||||||| |||||| | || Sbjct 120165 CTCAAGAAGCGTGGTCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGA 120107 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||||| || || | ||||| || ||||| |||| ||| | | ||| |||||| Sbjct 120106 TGAGGGCCTCCACTGTGACTTCGCTTGCCTGCTGTACTCCAAGCTTGTCA---ACAAGCT 120050 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT 42946 | || || ||| ||| | ||||| || ||||| | ||| |||||||||||| | Sbjct 120049 CCCGGAGTCGCGCATCCATGAGATCATTCGCGATGCCGTCGCGATTGAGAAGGAGTTCGT 119990 Query 42947 CACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACA 43005 | | | ||||| || || ||| |||||||||| | || | || |||||| |||||| Sbjct 119989 CCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAA-CTCGTCGCTTATGTGCCAGTACA 119931 Query 43006 TCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 || ||| | |||||| | ||||| ||| | | ||| || | | ||||| Sbjct 119930 TCGAGTTCTGCGCCGATCGCCTCCTCCATGC--GCTTGGTGTCGCCAAGATTTACAAGGT 119873 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 || ||| || |||| ||||| | |||||| | |||||||||||||||| ||||| Sbjct 119872 CTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGA 119813 Query 43124 GAAGCGCGTCGCCGACTAC 43142 ||||||||| | ||| ||| Sbjct 119812 GAAGCGCGTTGGCGAGTAC 119794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944206721014480