Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq72 176 1e-38 >seq72 Length=48362 Score = 176 bits (194), Expect = 1e-38 Identities = 685/1058 (65%), Gaps = 53/1058 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 24115 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAG 24174 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 24175 GTGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 24234 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| || | || | | ||||| |||| ||| || || || Sbjct 24235 CTTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATAAGCGTCGA 24294 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT- 333552 || || ||||| || ||| | ||| |||| | ||| ||||| ||| Sbjct 24295 CTTACCGGCACCGTTGGGGCCGATGACAGCAATACGCGAGGCGAGCGA-------GCACG 24347 Query 333553 TCACGTTG---TCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 |||||||| ||| ||| | || || || || |||| | || || | Sbjct 24348 TCACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAG-CAGTTC 24406 Query 333607 GT-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCG 333662 || || ||||| ||| || | ||| | ||| | | ||||| || ||||| Sbjct 24407 GTCAGACGAATGATCGGCTTACCCTTGTTCTTA---ATATCGGCAAGGAAACCAGGCTCA 24463 Query 333663 GGGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 24464 GGGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGC 24520 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || ||| |||||||| || || || ||||||||| |||||||||| |||| || Sbjct 24521 TTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTTC---TCA 24577 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||||| || | ||||||||| ||||||||||| |||||||| | Sbjct 24578 TAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCGGAGTCGTGCGACACAATGAGC 24637 Query 333840 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAA 333899 | | |||| | | ||| | | ||||| || |||||| | ||||| |||| Sbjct 24638 GAAGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCC 24697 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | ||||| |||||||| |||||||| || | | || |||| |||||| ||||| || Sbjct 24698 AAGTGGTTCGTCGGCTCATCAAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCC 24757 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 334019 | | || ||||| ||||| || || | |||| | |||| |||| || Sbjct 24758 AACTCAAGCTTCATCTTCCAACCACCCG--AGAGGGCACCGACAGGCA---TGGC-CTGC 24811 Query 334020 ATATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAA 334071 || || ||||| || || ||| | || || || || ||||| | | | Sbjct 24812 ATCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---A 24866 Query 334072 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGG 334131 ||| ||| | || ||| | |||||||| |||| | | | || || Sbjct 24867 GGTT---CTTAAGAGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCCT 24923 Query 334132 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 334191 | | ||| | ||| || ||| | | || |||| ||||| | ||||| || | Sbjct 24924 CAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTCAGCTCATCCTGCGTAGGGAAGCCCT 24983 Query 334192 CAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCAC 334251 | ||||| |||||| || |||||||| || || || || || ||||| || || | Sbjct 24984 CGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTGCCGCAACCGTTCGGGCCGC 25043 Query 334252 ACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTC 334311 ||||||||||||||| |||||||| || | || | |||||||| ||||| | | Sbjct 25044 ACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 25103 Query 334312 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 |||| || || || || || || || | || |||||| Sbjct 25104 CACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 25141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102721411715050