Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2426 340 2e-88 seq9 159 3e-34 seq1222 100 3e-16 >seq2426 Length=2661 Score = 340 bits (376), Expect = 2e-88 Identities = 1152/1764 (65%), Gaps = 53/1764 (3%) Strand=Plus/Minus Query 152721 GTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAA 152780 ||||||| || ||||||||||| ||||| || ||||| ||| ||| || || Sbjct 2510 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 2451 Query 152781 GTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATG 152840 |||| | | |||||| | ||| | | || || | ||| |||||||| ||| Sbjct 2450 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 2391 Query 152841 AAAGCGTTACGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGT 152899 | ||| ||||| || ||||| |||| || || || ||| || |||||||| |||| Sbjct 2390 TAGGCGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGC-TTGATCTCCCACACGGT 2332 Query 152900 TTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGT- 152958 |||||| | || ||| ||||| || | | |||||| | ||||| | || Sbjct 2331 CTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGTC 2272 Query 152959 GTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGA 153018 ||| | | | ||| || | |||||||| | | | || | ||||| || | | Sbjct 2271 GTGGAGGATCTG-GTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 2213 Query 153019 TCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTG 153077 | | ||||| ||| || | | |||| |||||| || | ||| || | || | ||| Sbjct 2212 TGAGGTACTTGTTCACGATCGTGAA-CTCGCCGGCGAGCACGCGGCGGTTGTACATGTTG 2154 Query 153078 CTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGC 153137 | ||||| || || | || ||||| ||||| || || || || || | || |||||| Sbjct 2153 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGC 2094 Query 153138 ATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGC 153196 || ||| | || || || || |||| ||||| | || ||| ||| |||| | ||| Sbjct 2093 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCG-CCTTGAGCGC 2035 Query 153197 CTGCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGTACTGTAACACTCC 153253 ||| ||||| || |||||| | || || |||||||||| |||| || | || Sbjct 2034 GGCCCAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCC 1975 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTC---GCGTTGGGCCAGTTC 153310 || |||| | ||| | ||||||||||| || || || | | Sbjct 1974 CTTGCTCACGGG--------CGAACCCTC-GTAGCTGCCGTACGGGCCATGCTCCCGCGC 1924 Query 153311 G-----CAGCTAG-CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364 | || | || |||| | |||||| |||| | || ||| ||| | || ||||| Sbjct 1923 GAGCTCCATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAG 1864 Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424 || || || ||||||||| ||| || || || | || ||||| || ||||| Sbjct 1863 CTCGCGGGCCTCGTCGCTCTCGAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACC 1804 Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGG 153483 ||| | |||| |||||| || || || | |||||||||| ||| |||| || | Sbjct 1803 CTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTGCGC-TCGGCCTCGGGGATCG 1745 Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543 | |||| ||| ||||| | ||||| ||||||||| || || || || || | | Sbjct 1744 GGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGT 1685 Query 153544 TAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAG 153603 || |||| ||| ||| ||||| | |||||| | | | | || || || || | Sbjct 1684 AGAGCTTCTTGAAGTCAAAGGTCTTGTCGTCGGT-CACAAACTTGGA--CAGCGCGATGG 1628 Query 153604 ACGCCAGATTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAG 153662 |||| || || || || || ||| |||| || || |||||| | | |||| |||| Sbjct 1627 ACGCGAGGTTGCACACCGCGACCTCATCGGGCGACG-TGTACTCGAGCACCTCGCAGCAG 1569 Query 153663 AGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCT 153722 |||||||| | || ||| | || ||||| || ||||| ||||||| ||| Sbjct 1568 AGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCC 1509 Query 153723 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGC 153779 ||| | ||||||||||| ||| ||||||| |||| |||| ||| |||| Sbjct 1508 TTGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACC---AG 1452 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 || | |||||| || | | || || ||||||||||| |||||| | | |||||| Sbjct 1451 AGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGC 1392 Query 153840 CGCTCAAACTCGTCGCCGTA-GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAG 153898 ||| ||||||||||| | | || | ||| || || || | ||| || | ||| Sbjct 1391 GCCTCGAACTCGTCGCCCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAG 1333 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 |||| ||| ||| | |||||| |||||| ||||| || | ||| | |||||| Sbjct 1332 GCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTA 1273 Query 153959 CATGAGGT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA-GCAC 154015 | ||| | ||||||| |||| ||| ||| ||| || || | | | || Sbjct 1272 GAAGAGATCACGCGCGCGGTGCA--GCTCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAAC 1215 Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT--- 154072 | | |||||||||||||||| || || | ||| | || | | || || ||||| Sbjct 1214 TCGA-AGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCC 1156 Query 154073 TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCC 154132 |||||||| ||||||| |||| || | | |||||||||||||| |||||| | ||||| Sbjct 1155 GCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCC 1096 Query 154133 GCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTT 154192 | | | | |||||| || ||| | | | ||||| | | |||||| | Sbjct 1095 GTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCT 1036 Query 154193 AACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGAT 154252 ||||| |||||||| | |||| || ||| ||||| | ||||| |||||| Sbjct 1035 GACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGAT 976 Query 154253 GCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCG 154312 ||| ||||| ||||| | | |||||| ||| ||||| ||| ||||| | Sbjct 975 GCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGG 916 Query 154313 CGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCG 154372 ||| ||||| || || || || |||||||||| || | |||| ||| Sbjct 915 CGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTC 856 Query 154373 GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 |||||| |||| ||| | || || || | ||| ||||||| |||||| |||| | Sbjct 855 GTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACCGCGACACGCAGAAT 796 Query 154433 CATGTGCTGCGGACGTTCGGCGAC 154456 ||| ||||||||||| || ||||| Sbjct 795 CATCTGCTGCGGACGCTCCGCGAC 772 >seq9 Length=143240 Score = 159 bits (176), Expect = 3e-34 Identities = 501/756 (66%), Gaps = 25/756 (3%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||| | |||||||||||||| | ||||||||||| || ||| | ||||| | Sbjct 120536 ACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCA 120477 Query 52153 ACATTAACCTCATCGA-GTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || |||||| ||| | || | |||||| | || | || | ||||||| | || Sbjct 120476 ACGAGAACCTCG-CGATGAACTTCAGCAGCG--AGGTGCAGGTTCCTGAGGCGCGTTGCT 120420 Query 52210 TTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTG 52269 | ||| || || | ||| ||| | | ||| ||||| ||||| |||||||||| Sbjct 120419 TCTATGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTG 120360 Query 52270 AGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACGTGC 52329 | | || || || || ||| || || || ||| ||||| | | | Sbjct 120359 ATACGTACATCAAGGACCAGACGGAGAAGAACCACCTTCTCCGTGCCATCGAGACCATTC 120300 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCACG 52388 | ||||| | || ||||| || ||||| | |||||| ||| ||| | | || | Sbjct 120299 CATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGC-GCGGCT 120241 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | || |||||||| || || ||||| || |||||| | || || || ||| || Sbjct 120240 TTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTC 120181 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 | ||||||| | | || | | || | ||||| ||||| | ||| |||||| Sbjct 120180 TGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAG 120121 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACG 52565 | || ||||| || || || || ||| ||||| || ||||| |||| |||| Sbjct 120120 CTCATCTCGCGTGATGAGGGCCTCCACTGTGACTTCGCTTGCCTGCTGTACTCCAAG--- 120064 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAAGGAGGCGGTGGC 52624 | || | | | ||| ||| || ||| |||| ||| | | || || || Sbjct 120063 CTTGTCAACAAGCTCCCGGAGTCGCGCA---TCCATGAGATCATTCGCG-ATGCCGTCGC 120008 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 || || |||||||| | || | |||| |||||||||||| | ||||||||| || Sbjct 120007 GATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGGCATGAACTCGTC 119948 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG-TGCAGCTCGG-GCAG 52742 | |||||| ||||||||||||| || ||||| || | ||| ||| || | | Sbjct 119947 GCTTATGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCATGC-GCTTGGTGTCG 119889 Query 52743 CCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 |||| | | ||| | |||| || |||||||| | ||| ||| || ||||| |||| Sbjct 119888 CCAAGATT-TACAAGGTCTCG-AACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGG 119831 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||| ||||||||||| || |||||||| Sbjct 119830 CAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTA 119795 >seq1222 Length=6011 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||| | Sbjct 2176 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCG 2117 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || |||||||| || || || ||||| ||| || || || | | Sbjct 2116 AAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACA 2057 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | |||| | | ||| || |||| ||| | ||| || || |||||||| || Sbjct 2056 TTG-TCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTT 1998 Query 138600 TACAAAAATCTGCA 138613 || || ||||||| Sbjct 1997 GACGAAGATCTGCA 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496192780588560