Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2426 188 7e-43 seq1222 138 1e-27 seq9 104 2e-17 >seq2426 Length=2661 Score = 188 bits (208), Expect = 7e-43 Identities = 339/491 (69%), Gaps = 6/491 (1%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 |||||| |||||||| |||| | || |||| |||||||| ||||||||||| || Sbjct 2547 GTCGACCGTGAACTGAATCGCGTCGGCCTTCGGTCGCGTGCGCAGGTAGTACATGCCCGT 2488 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGGT 145836 |||||| |||| ||||| ||| ||||| ||| || || | | || ||| || Sbjct 2487 CTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGAT--CGTCGGC 2430 Query 145837 TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGGC 145895 || |||| || || || || |||||||| ||| | || ||| ||||| ||||| Sbjct 2429 TCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGTCAGCGGC 2371 Query 145896 CATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTG 145955 |||||| | || ||| || || ||||| |||| || | ||||| ||| Sbjct 2370 CATGTCAAGCACAGCCTTCTGCTTGATCTCCCACACGGTCTTGTACTTCTCCTTCACGGC 2311 Query 145956 CTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAA 146015 | || || || | ||||||||| || || | ||| | || | |||||||| Sbjct 2310 GTCCGGGATCACGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCAC 2251 Query 146016 TTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTG 146075 || || || | ||| | || | ||| |||| ||||| |||| ||| || | | Sbjct 2250 CTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGT 2191 Query 146076 AAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTC 146135 |||||||||||||| ||||| | |||| |||| | ||||||||||||| |||||| Sbjct 2190 GAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTC 2131 Query 146136 GTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| ||||| |||||||| |||| || || ||||| ||| | ||||| ||||| Sbjct 2130 GTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTT 2071 Query 146196 TCTCACGCCGT 146206 | |||||||| Sbjct 2070 GCGCACGCCGT 2060 >seq1222 Length=6011 Score = 138 bits (152), Expect = 1e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 2209 CCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2150 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| |||||| ||||||||||| ||||| Sbjct 2149 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGATCCGGAGGG 2090 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| |||||||||| | || | | |||||| | |||||| Sbjct 2089 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACG 2030 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 |||| || | ||| |||||||||||||| || || || ||||||| Sbjct 2029 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCA 1984 >seq9 Length=143240 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 ||| |||||||| ||||||| |||||| || || | || || | | | || Sbjct 120019 CGATGCCGTCGCGATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGATCGG 119960 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||| || | | ||| | |||||||||| || |||||| ||||| ||| | Sbjct 119959 CATGAACTCGTCGCTTATGTGCCAGTACATCGAGTTCTGCGCCGATCGCCTCCTCCATGC 119900 Query 47474 GCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 ||| || || ||||||||||| | | ||| || || || | ||| ||| || | Sbjct 119899 GCTTG-GTGTCGCCAAGATTTACAAGGTCTCGAACCCGTTTGACTGGATGGACATGATCT 119841 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| |||||||||||||| ||||| || Sbjct 119840 CGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTA 119795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475434093181520