Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2426 259 6e-64 seq9 197 2e-45 seq79 98.7 1e-15 >seq2426 Length=2661 Score = 259 bits (286), Expect = 6e-64 Identities = 1115/1741 (64%), Gaps = 55/1741 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| |||| |||||| || || | ||||| || | | Sbjct 2507 CGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTC 2448 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| || || || | ||| | ||| | ||| || |||| || Sbjct 2447 AGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAG 2388 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || || || || ||||| |||| |||| ||||| |||||| |||||||| || || Sbjct 2387 GCGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGCTTGATCTCCCACACGGTCTTG 2328 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATC---CACGATATTTTGGATAGAGCCACCTGCC 115794 || | ||| | | || ||||| | |||| || || | ||||| | Sbjct 2327 TACTTCTCCTTCACGGCGTCCGGGATCACGCGCACG---TTCTGCACCGAGCCGTGGTCG 2271 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | || || | | || || | ||||| || | || |||| |||| || | Sbjct 2270 TGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATG 2211 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 |||| ||| || || | ||||| || ||||| ||| | || ||||||||| Sbjct 2210 AGGTACTTGTTCACGATCGTGAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTC 2151 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||| | ||||| | |||| ||||| || | ||| || || || || || || ||||| Sbjct 2150 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATC 2091 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || || | || || |||||| | || | | | || ||||||| ||| || Sbjct 2090 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCC 2031 Query 116035 CAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCCACATATCAAACTGGAGGATACCTTGG 116091 ||||| || | ||| | | ||||||| || ||||||| ||| || | | Sbjct 2030 CAGTCCCAGAGACCCGACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTG 1971 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAG 116148 | | ||||| ||||| | | | || ||||| | || ||| | || ||| Sbjct 1970 CTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCATGCTCCCGCGCGAGCTCCATCGAG 1911 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 116208 ||||| | ||| | |||| ||||| || ||| || | | |||| Sbjct 1910 ---GCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCC 1854 Query 116209 TCGTCGGAATCAAACGCG-AGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACAC 116266 |||||| || |||||| || | || | || || | ||||||||||| || || | Sbjct 1853 TCGTCGCTCTCGAACGCGTAGCC--CATGAGGATGAACGCGTCCGCGAGACCCTGCACGC 1796 Query 116267 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGATAAA 116323 ||| ||| || ||||| || | || || | || ||| ||| | || || Sbjct 1795 CGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCGGCCTCGGGGATCGGGTAGT 1739 Query 116324 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 116383 | || | ||||| ||| | || || || ||||| ||||| ||||| || | |||| Sbjct 1738 AGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCT 1679 Query 116384 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 116443 | | | | ||||| | | || || | ||| |||| | || ||||| ||||| | Sbjct 1678 TCTTGAAGTCAAAGGTCT---TGTCGTCGGTCACAAACTTGGACAGCGCGATGGACGCGA 1622 Query 116444 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTG 116503 | || ||||| | | |||||| |||||||| | | || || | || Sbjct 1621 GGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTG- 1563 Query 116504 AACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 116560 ||| || ||||| | ||||| || || ||||| ||| |||| ||||||| Sbjct 1562 --CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGT 1505 Query 116561 AGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGG 116620 | ||||| || ||||| || ||||| | || |||| ||| || || ||| | | Sbjct 1504 ACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA-----G 1450 Query 116621 CGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGC 116675 | |||| || | | | | ||| || || ||||| |||||||| ||| || || Sbjct 1449 CTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGC 1390 Query 116676 CTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAG 116734 ||| ||||| || ||| || | | | ||||||| || |||| | || ||||| || Sbjct 1389 CTCGAACTCGTCGCCCCACGTCGTGT-AGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGC 1331 Query 116735 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 116794 ||| | || |||| || |||||||||||||| || |||||||| | ||| ||| Sbjct 1330 TCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGA 1271 Query 116795 AGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 ||||||| || ||| || || | | || || || | |||| || || Sbjct 1270 AGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCG 1212 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCA 116910 | ||| || ||||||||||| |||||||||| ||||| || |||||||| | || Sbjct 1211 AAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCG 1152 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| || || | |||||| |||| || ||||| ||||| || | || || | Sbjct 1151 CCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTC 1092 Query 116971 GATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCA 117028 || ||| || || || || || ||||| ||| | || | || | ||| | | | Sbjct 1091 GACGAGCCGTTCGTGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGA 1034 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 || || || || |||||||| ||||| ||||||| | |||| || ||||||| | Sbjct 1033 CGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGC 974 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | ||||||||||| |||| | |||| |||||||| ||||| || || | || | Sbjct 973 CCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCG 914 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGT 117208 | || |||||||| || || || |||||||| |||| | | ||| ||||| | |||| Sbjct 913 TGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGT 854 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 | ||||| | | | | |||||| | | ||| || |||| | ||| |||| || || Sbjct 853 ACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACCGCGACACGCAGAATCA 794 Query 117269 T 117269 | Sbjct 793 T 793 >seq9 Length=143240 Score = 197 bits (218), Expect = 2e-45 Identities = 404/589 (69%), Gaps = 20/589 (3%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | ||| ||| | Sbjct 119788 CTTGGAGTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCAT 119847 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAG---TTCCAAATTGTTGGC-ACCCCAATCTGTT 127340 ||||| | ||||| |||||| ||| || |||| ||||| || |||| | | Sbjct 119848 GTCCATCCAGTCAAACGGGTTC---GAGACCTTGTAAATC-TTGGCGACACCAAGCGCAT 119903 Query 127341 TGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGA 127400 |||||| ||||| | | | |||| ||||||| |||| | |||||||| |||| Sbjct 119904 GGAGGAGGCGATCGGCGCAGAACTCGATGTACTGGCACATAAGCGACGAGTTCATGCCGA 119963 Query 127401 TGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460 | || | || |||| |||| || |||| |||||||||| | || || || || | Sbjct 119964 TCAGCTCGACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAA 120023 Query 127461 CGATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG 127520 ||| | || || | | | || || || | | ||| |||| |||| | ||| Sbjct 120024 TGATCTCATGGAT-GCG-CGACTCCGGGAGCTTGTTGACAAG-CTTG--GAGTACAGCAG 120078 Query 127521 -----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 | || || |||||| ||||| ||||| |||||||| || |||||||||| || Sbjct 120079 GCAAGCGAAGTCACAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAG 120138 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 || ||||||||||| |||||||| | |||||| || | || || ||||| |||||||| Sbjct 120139 GCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAA 120198 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTAT 127694 || ||||| || |||||||| | | ||||| || |||| ||| | | | | Sbjct 120199 AATGCCCTCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGT 120257 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTT 127754 | ||||||| | |||||| || ||||| |||| | ||||| | ||||| ||| || Sbjct 120258 CGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCAC 120317 Query 127755 CAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | || | ||||| || | | || ||||||||| |||| ||||| Sbjct 120318 GGAGAAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTATCAATGAG 120366 >seq79 Length=46062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 176828 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 176887 || || ||||||||||| | ||||| ||||| || ||||| ||| | ||||| |||| Sbjct 11088 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 11029 Query 176888 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCC 176947 || || || || ||||| |||| |||||||| || ||| | | || || || || Sbjct 11028 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 10969 Query 176948 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 176991 | |||||||||||| | ||| ||||| || || | || ||||| Sbjct 10968 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613421132608680