Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq38 154 2e-32 seq2426 136 5e-27 seq9 125 8e-24 seq79 93.3 5e-14 >seq38 Length=69948 Score = 154 bits (170), Expect = 2e-32 Identities = 291/422 (69%), Gaps = 17/422 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||||||||||||||| || || || | || | || ||||| ||||||||||| Sbjct 14305 AATTTGACGATCGAAACGACCGGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 14364 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| |||| | || || | ||| |||| | || ||| || ||||| || ||| Sbjct 14365 CGTACCGGCGAGCACAACCACGCC---CTCACTCGAGTTGAAGCCATCCATCTCCACGAG 14421 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTT------GGAGGGCATACCACCTGCCGA 11666 | |||||||| ||| | || ||||| ||||| |||| | | || | ||| Sbjct 14422 CAACTGGTTGAGCGTGTTCTCTCGCTCGTCGTTACCACCGGAGAACGTTCC-CTTGCT-- 14478 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 ||| | ||||||| || || ||||||||||| || || ||||| ||||||||| Sbjct 14479 ACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCACGGAGAGTTGGCACG 14538 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| ||| || ||||| |||||| || || ||||| || |||||||| | ||| Sbjct 14539 AGCCTCACGGAACAGGTCACGCACACGCGACGGACCGACACCGACAAACATCTCGATGAA 14598 Query 11787 GTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGA 11845 | | | | | || ||||| ||| || || ||| ||||| || | || |||| Sbjct 14599 ATCCGAGCCCGAAATGCTGAA-GAACGGCACGCTAGCTTCACCGGCCGTCGCCTTCGCGA 14657 Query 11846 GGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCAC 11905 | || |||||||| ||||| || | ||| | || || || || ||||||||||||| Sbjct 14658 GCAGCGTCTTACCAGTACCGGGGGGTCCAACTAGCAGCGCACCCTTCGGGATCTTGGCAC 14717 Query 11906 CA 11907 || Sbjct 14718 CA 14719 >seq2426 Length=2661 Score = 136 bits (150), Expect = 5e-27 Identities = 537/832 (65%), Gaps = 17/832 (2%) Strand=Plus/Minus Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||| ||| ||||| ||| |||||| | ||||| || |||||||| || || || || Sbjct 1542 GTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGT 1483 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--TGCGTT 110495 || |||| |||| ||| || || ||| | | | ||| || ||| || |||| Sbjct 1482 CTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCG-CGCGGATCGTCTTGCGC- 1425 Query 110496 AGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATC 110555 ||| | || || |||||||| | ||||| |||| || || | || ||| || Sbjct 1424 -GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCC--CACGTC 1368 Query 110556 AGAAAGA--CCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACC 110613 ||| ||| ||||| || || ||||| ||| ||| | || |||| || Sbjct 1367 GTGTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACG 1308 Query 110614 CTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTC 110672 | ||||||||| || || || ||||||||||| |||| || ||||| || | || | Sbjct 1307 CGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGC 1248 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| || |||| || || | ||| || | |||||| || || Sbjct 1247 -TCGTTGCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTC 1189 Query 110733 GAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGT 110789 || || | |||| || ||||| || | || |||||| || ||||| || || Sbjct 1188 CAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGT 1129 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | | |||||||| | ||||| || | | || | || || || || || | || Sbjct 1128 GTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGAT 1069 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 || || | || || |||| ||| | | || || || || |||||||| Sbjct 1068 GTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGA 1009 Query 110910 AATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGC 110969 || || |||| |||| || | || || || || ||||| || |||| |||| Sbjct 1008 GATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGC 949 Query 110970 AATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGT 111029 | || ||||| || |||| ||| || || ||||| ||||| ||||| || || || || Sbjct 948 GAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGT 889 Query 111030 CGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATC 111089 ||| || |||| | | ||| ||||| | | ||| || ||||| |||| | | || Sbjct 888 CGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTC 829 Query 111090 TTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG-CGTTTCGATTAGCT 111148 | ||| || || | || || |||| | ||| | || || || | || | || Sbjct 828 GTGCTTGTGGATGCCGACCGCGACACGCAGAATCATCTGCTGCGGACGCTCCG-CGACCT 770 Query 111149 TTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | || | || || | ||||| |||||| || ||||||| |||||||| Sbjct 769 TGCCGCCGACGCGGAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 718 >seq9 Length=143240 Score = 125 bits (138), Expect = 8e-24 Identities = 193/275 (70%), Gaps = 9/275 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || ||||| || ||||||||||| || Sbjct 120095 TGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCA 120154 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || ||||| |||||||| || Sbjct 120155 CGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCTCAACGGCA 120214 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG------GTCGAGACTTGTCGAACCACTTGAGA 119681 ||||| |||| | ||||||||||||| | || || |||| |||||||||| Sbjct 120215 GCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGCGCGA---GTCGCACCACTTGAGC 120271 Query 119682 GCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTC 119741 ||||||| ||||| || | ||| || | || | |||||| || ||| || ||| Sbjct 120272 GCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCACGGAGAAGGTGGTTC 120331 Query 119742 TTTTCAGCACCATCCTTAATATATTTATCAATGAG 119776 || || | ||||| || || |||||||||| Sbjct 120332 TTCTCCGTCTGGTCCTTGATGTACGTATCAATGAG 120366 >seq79 Length=46062 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 168439 AGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTT 168498 |||||||| || || |||| || | || || |||||||| ||| || |||| || Sbjct 11088 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 11029 Query 168499 TTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCCGTACCAGCT 168558 || ||||| || ||||| |||| ||||| || || ||| | || || |||||||| Sbjct 11028 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 10969 Query 168559 TTGTTCGCATCGTCCAATTTGGGGATACCAGTGATCTTAGACTT 168602 | |||||||||||| | || || || || |||| ||| ||||| Sbjct 10968 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588893374029400