Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2426 206 3e-48 seq9 138 1e-27 seq79 84.2 3e-11 >seq2426 Length=2661 Score = 206 bits (228), Expect = 3e-48 Identities = 572/861 (66%), Gaps = 17/861 (2%) Strand=Plus/Minus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 1553 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 1494 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| || ||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 1493 GGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 1434 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || ||||| |||||||| ||| || || || ||||| || | Sbjct 1433 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 1376 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 1375 CCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 1317 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 |||| || ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 1316 GCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 1257 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 106898 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 1256 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCCAGGAACTCGAAGATGTCGGCGT 1199 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 106955 |||| ||||| || || | |||| || ||||| || ||| | | || | || | Sbjct 1198 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGT 1139 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 ||||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 1138 AGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 1079 Query 107016 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 | || || || ||||| || | || | | | || | | | || || || || Sbjct 1078 TGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCC 1021 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 ||||||||| ||||| ||| |||| | | || || | ||||| || | ||| ||||| Sbjct 1020 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 961 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 960 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAA 901 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 900 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 841 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGT 107313 | |||||||| | | ||||||||||| || ||||||| || ||| | || || Sbjct 840 GGCGTCAATGTCGTGCTTGTGGATGCCGACCGCGACACGCAGAATCATCTGCTGCGGACG 781 Query 107314 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 ||| || |||| ||| || | || || |||||| || || |||| ||||| Sbjct 780 CTCCGCGACCTTGCCGCCGACGCGGAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 721 Query 107374 GTAACCAAAATCATAGTCCCG 107394 ||| | | ||| |||| || Sbjct 720 GTAGTCGTACTCAAAGTCGCG 700 >seq9 Length=143240 Score = 138 bits (152), Expect = 1e-27 Identities = 356/531 (67%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || ||||| |||||||| |||||||||||||| || | || || | ||||| Sbjct 119795 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 119854 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC-ACCCCAACTTGTTTGAGGAGACG 117104 ||||||| || ||| | || |||| |||| || |||| | |||||| || Sbjct 119855 CAGTCAAACGGGTTCGAGACCTTGTAAATCT-TGGCGACACCAAGCGCATGGAGGAGGCG 119913 Query 117105 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 ||| | || | |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 119914 ATCGGCGCAGA-ACTCGATGTACTGGCACATAAGCGACGAGTTCATGCCGATCAGCTCGA 119972 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 || || | |||| || |||| | ||||||||| | || || || | ||| | | Sbjct 119973 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCAT 120032 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCA 117276 |||| | ||| || || | || ||| |||| || | || | || Sbjct 120033 GGATGCGCGACTCCGGGAGCTTGT---TGAC---AAG-CTTGGAGTACAGCAGGCAAGCG 120085 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || |||||| |||||||| || || || || || || ||||||| ||||| ||| Sbjct 120086 AAGTCACAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 120145 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | || | |||||| || || |||||||| || ||| Sbjct 120146 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCC 120205 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGC-GAAGGAGCGAGACTTTGTGTCAAACCA 117455 || || || ||||| | || |||||| || ||| ||| | | | ||| |||| Sbjct 120206 TCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 120264 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || | ||||| | ||||||||||| | ||||| | || | |||||| Sbjct 120265 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGC 120315 >seq79 Length=46062 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 169371 AGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTT 169430 || ||||| || || || | ||||||||||| |||||||| || || || | ||| Sbjct 11088 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 11029 Query 169431 TTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCCGCC 169490 || ||||| || ||||| || | |||||| || || ||| | | ||| ||||| || Sbjct 11028 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 10969 Query 169491 TTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 169534 | ||| || ||||| | ||| ||||| || || | || ||||| Sbjct 10968 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589898033068520