Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2426 342 1e-88 seq9 215 1e-50 >seq2426 Length=2661 Score = 342 bits (378), Expect = 1e-88 Identities = 1206/1850 (65%), Gaps = 88/1850 (5%) Strand=Plus/Minus Query 212586 GTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCT 212645 ||||| || ||||||||||| ||||| || ||||| ||| ||| | |||||| | Sbjct 2510 GTGCGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGAC 2451 Query 212646 GTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGT--AGGTTCAGGG 212703 || |||||| ||| ||| ||| || ||||| | ||| || | Sbjct 2450 GT---------CAGCTTG-----CTG---ATCGTCGGCTCCGCGATGTGCACGTTGAGCG 2408 Query 212704 ACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGG 212763 |||| |||||| ||| | | | | | ||||||||||||||| | | | | |||| Sbjct 2407 ACTGGCTCTGGCAGATGTAGGCGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGCT 2348 Query 212764 AGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCT 212823 || |||||||||||||||| | | || || | | | || |||| || | | ||||| Sbjct 2347 TGATCTCCCACACGGTCTTGTACTTCTCCTTCACGGCGTCCGGGATCACGCGCACGTTCT 2288 Query 212824 GCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGT---TCCAGAGGCCCC 212880 |||| || || || | | ||| ||||| ||||| |||||| ||| Sbjct 2287 GCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCA---CCTCGGGCGTCCAGATGCC-- 2233 Query 212881 TGGTCTCCAGGCACT---TGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCA 212937 | ||| | | || | | |||| ||| || ||| ||| || || | ||||| Sbjct 2232 -GAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGAACTCGCCGGCGAGCA 2174 Query 212938 CCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCT 212997 | | | | ||| | ||| | ||| | |||||||| ||||||||| || || |||| Sbjct 2173 CGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCT 2114 Query 212998 GTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGC 213057 | ||||| || || ||||| || || | ||| || ||| | ||| |||| || Sbjct 2113 GCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCG 2054 Query 213058 CGATGAGGCGCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACG 213116 ||| | |||| ||| | ||||||||||| || ||| ||| ||| ||| Sbjct 2053 CGACGCT-CGCCTTGAGCGCGGCCCAGTCCCAGAGACCCGAC--GTCGGCGTG----ACG 2001 Query 213117 TTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAG 213176 ||||||||| ||||| |||||||| ||||||||||| |||| ||| | ||| Sbjct 2000 CCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGTAGCTGCCGTAC 1941 Query 213177 GGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCA 213236 |||||||||||| || ||||| || |||| || ||| | |||| | || || Sbjct 1940 GGGCCATGCTCCCGCGCGAGCTCCATCGAGGCCTCCATGGCGCCAAAGTACAGCGTCTCG 1881 Query 213237 AATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAA-GGGCATCATCATGCGTTG 213295 || || | | ||||||||| |||||| | | ||| | | | | |||| | Sbjct 1880 AAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCGAACGCGTAGC-CCATGAGGAT 1822 Query 213296 GAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT 213355 |||| | || || || ||||| || ||||||||||| || | ||| | |||||| || Sbjct 1821 GAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTT--GCT- 1765 Query 213356 GGAGCAC-TCCTC---CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGG 213411 | || | |||| | ||||| ||||| |||||||| |||||| |||||||| | Sbjct 1764 -GCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCG 1706 Query 213412 TGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCC---CCGTCCT 213468 || | || ||||||| | | || | | ||||| | || | |||| Sbjct 1705 TGACGACCTTGGTGATGTCGTAGAGCTTC------TTGAAGTCAAAGGTCTTGTCGTCGG 1652 Query 213469 GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCT 213527 |||||||| | ||| |||||| || |||||||| || || ||||| | | | | | Sbjct 1651 TCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGGCGAC- 1593 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | | |||| ||| |||||||| | ||||| ||||| |||||||| ||| Sbjct 1592 GTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGG 1533 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || ||| ||||| | ||| || |||||||| |||||||| || | || ||||| | ||| Sbjct 1532 TTCGAC-TTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGATCTG 1474 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC-CGG 213705 ||| | || ||| | |||||| | | || || || || | || | ||| Sbjct 1473 CGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA----TCGTCTTGC-GCGCGCGG 1419 Query 213706 GCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGT 213764 | | || ||||||||| | ||| ||| | | ||| |||| |||||| | ||| || Sbjct 1418 CCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGCCCCACGTCGTGTAGAGC 1359 Query 213765 CCCGG-ACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCAT 213823 ||||| | | |||| || | |||||||| || |||| | ||| | || ||| Sbjct 1358 CCCGGCGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCAT 1300 Query 213824 GAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCAC 213880 ||| || || |||| ||||| |||| ||| || || | | | | ||||| Sbjct 1299 GAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGT---T 1243 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| || || || || || || |||||||| |||||||||||||||| ||| Sbjct 1242 GCCGTGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTA 1183 Query 213941 GATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCCACCATGTT 213997 || || || | |||| | ||| |||||||||||| || | ||| ||| Sbjct 1182 CATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTT 1123 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 ||||| |||||| | ||| || || ||||| ||| ||||| || || || ||||| Sbjct 1122 GAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGA 1063 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 | || || | | |||| || | || || ||||| || || |||||||||| Sbjct 1062 GTTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCA 1003 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA 214177 ||||| || | | || || |||||| | || ||| || | | | |||| Sbjct 1002 CGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAG 943 Query 214178 GAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 |||||| ||| ||||| || | | || ||| | |||||| ||||| || | || || Sbjct 942 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTG 883 Query 214238 GATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTT 214297 | | || | | || | | | ||| ||||| || | | | ||||||||||| Sbjct 882 CGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTT 823 Query 214298 GTGGATCTGTAGAGCGC-AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT-- 214353 ||||| || || ||| || | || | ||| ||||| || | ||| | | |||| Sbjct 822 GTGGA--TGCCGACCGCGACACGCAGAATCATCTGCTGCGGACGCTC--CGCGACCTTGC 767 Query 214354 TGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 | | | ||| ||||| || ||| || |||||||| ||||||||| Sbjct 766 CGCCGACGCGGAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAG 717 >seq9 Length=143240 Score = 215 bits (238), Expect = 1e-50 Identities = 514/767 (67%), Gaps = 25/767 (3%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 119794 GTACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 119853 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| | || || | | | | || | | | || ||| | Sbjct 119854 CCAGTCAAACGGGTTCGAGACCTTGTAAATCTTGGCGACACCAAGCGCATGGAGGAGGCG 119913 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--GAC 48019 ||| ||| | |||||||||| | |||| || | ||||||||| || || ||| Sbjct 119914 ATCGGCGCAGAACTCGATGTACTGGCACATAAGCGACGAGTTCATGCCGATCAGCTCGAC 119973 Query 48020 ACGG--GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| || | ||| || ||||||||||| ||| ||||| || | | |||| Sbjct 119974 -CGGAAGCGAGTCCTG---GACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCT 120029 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 | | ||| ||||| | | | |||||| || ||||| || |||| ||| || | Sbjct 120030 CATGGATGCGCGACTCCGGGAGCTTGTTGACAAG---CTTGGAGTACAGCAGGCAAGCGA 120086 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||| | ||| || || || ||||||| |||| ||||||| ||| ||||||| Sbjct 120087 AGTCACAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 120146 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || | ||| ||||| |||||||| ||||||| Sbjct 120147 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCCT 120206 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCC 48314 | || || ||||||||| | | ||| | |||| || | | ||| | || Sbjct 120207 CAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGCGCGAGTC---GCACC 120263 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | |||||||||| |||||||||| | |||||| || ||||| ||||| |||| | Sbjct 120264 ACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCACGGAGAA 120323 Query 48375 GCTTCTTGCACT-CACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 | | || || | ||| |||| | || || | |||||||| | ||||| | Sbjct 120324 GGTGGTTCTTCTCCGTCTG-GTCCTTGATGTACGTATCAATGAGCAGC---GAGTACACC 120379 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| || |||||| | |||||| ||| Sbjct 120380 TCCGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGCAACGCGCCTCAGGAACC 120439 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || || ||| || | || ||||| ||||| || || || || || Sbjct 120440 TGCACCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATACCGTCGCTCGCCGCG 120499 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG 48597 ||||| || ||||| || || | || ||||||||||||| ||||| Sbjct 120500 AAGAACGCGAGGACGTGCTTGATAAAGTGGCGCTCGTTGTCCGTGAG 120546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931402117592320