Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2426 183 4e-41 seq9 138 1e-27 seq79 87.8 2e-12 >seq2426 Length=2661 Score = 183 bits (202), Expect = 4e-41 Identities = 570/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || |||||| || || | || Sbjct 700 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTCCGC 759 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||| |||| || ||| || ||| | ||| | |||| ||||| |||||||| Sbjct 760 GTCGGCGGCAAGGTCGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCGGTCGGCATC 819 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | |||||||| | | | ||||| ||||| | ||||| ||| | | ||| Sbjct 820 CACAAGCACGACATTGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTC 879 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || ||||| || || || || | |||||| |||| ||| Sbjct 880 ACGCACGCGACGCCGACGCTGTTCAACGCGGGCACGCCGCGCCCGCAGCTGTCGTCGTGC 939 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| |||||| ||||| ||||| ||| | || ||||| | || || | | |||| Sbjct 940 TTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGC 999 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 ||| ||||| ||||||||||| || || || | | | || | | | || | Sbjct 1000 GCGTGCATCTCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGACC 1059 Query 75488 AAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || ||||| || || || || || || || | || | | || ||||| |||| Sbjct 1060 AA--CTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCG 1117 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCG 75602 | || |||| ||| |||||||| || | || |||| ||| |||||||| || ||| Sbjct 1118 TCTTCAACGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCG 1177 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAAC 75661 || | ||| |||| || ||||| ||||| ||| | |||||||| || | | || ||| Sbjct 1178 CGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGA-AGAAC 1236 Query 75662 CAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || ||| || || | | | | |||||||| | | ||||||| || || || Sbjct 1237 CACGGCAACG-AGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCT 1295 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| || |||| || | ||| || ||||| || || |||| || Sbjct 1296 CTTCATGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCC 1355 Query 75781 AGGTCTCTCCGACG-CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 || |||| | ||| || ||| || ||||| || || || ||| |||| || | Sbjct 1356 GGGGCTCTAC-ACGACGTGGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCG 1414 Query 75840 AGGGTAGAGC---CAATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 |||| | || ||| ||| | | | |||| || | ||| || || ||| | Sbjct 1415 AGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGA 1469 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || |||| ||||| || || || || ||||| |||||||| | || ||| ||| Sbjct 1470 GTCGCAGATCGAGACAGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTC 1529 Query 75955 TAACCAAAAGAATTTGGGAACAATC 75979 ||||| |||| | || || ||| Sbjct 1530 GAACCAGCAGAACCTCGGCACGATC 1554 >seq9 Length=143240 Score = 138 bits (152), Expect = 1e-27 Identities = 356/531 (67%), Gaps = 20/531 (4%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | ||||| | ||||||||||| | ||||| | || |||| ||| Sbjct 120315 GCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGAC 120256 Query 65056 ACAAAGTCTCGCTCCTTC-GCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | | | ||| ||| || |||||| || | ||||| || || ||||| || || Sbjct 120255 TCGC-GCCGCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCGTTGAGGGCATTTT 120197 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| ||||||||||| ||||| Sbjct 120196 CTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCT 120137 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CGT 65231 ||||||| || || || || || || |||||||| |||||| || || || | | Sbjct 120136 CAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCCTCCACTGTGACTTCGCTTGCCT 120077 Query 65232 GGAGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCG 65287 | | || |||| ||| || | || || ||| | ||||| | ||| Sbjct 120076 GCTGTACTCCAAG-CTT---GTCA---ACAAGCTCCCGGAGTCGCGCATCCATGAGATCA 120024 Query 65288 TGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCA 65347 | || || || | ||||||||| | |||| || |||| | || || | || | Sbjct 120023 TTCGCGATGCCGTCGCGATTGAGAAGGAGTTCGTCCAGGACTCGCTTCCGGTCGAGCTGA 119964 Query 65348 TCGGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTG-TCGGATCGTCTCCTC 65406 |||| |||||||| | |||| | ||||||| |||| | || | ||||| |||||| Sbjct 119963 TCGGCATGAACTCGTCGCTTATGTGCCAGTACATCGAGT-TCTGCGCCGATCGCCTCCTC 119905 Query 65407 AAACAAGTTGGGGT-GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAA 65465 | |||| || |||| |||| || | ||| || ||||||| ||||| | Sbjct 119904 CATGCGCTTGGTGTCGCCA-AGATTTACAAGGTCTCGAACCCGTTTGACTGGATGGACAT 119846 Query 65466 CATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || || | || |||||||||||||| |||||||| ||||| || || Sbjct 119845 GATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGAGTA 119795 >seq79 Length=46062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 265/408 (65%), Gaps = 26/408 (6%) Strand=Plus/Plus Query 13538 AAGTCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAA 13597 ||||| || | ||||| ||||| ||| | || || |||||| | || ||||| || | Sbjct 10925 AAGTCGAAGCTCACCGGAATTCCGAAGCTCGACGATGCGAACTACGCTGGTACAGCGAAG 10984 Query 13598 TCTGGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCG 13657 | ||| || || |||||| | || ||||| || || || || ||| |||| | Sbjct 10985 GGTCAAAACTGCACGCTCATTTTGACTGAGGGCGAATCAGCCAAGACCTTCGCAATCAGT 11044 Query 13658 GGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAG 13717 || ||||| || ||||| ||||| | ||||||||||| ||||| || ||| | Sbjct 11045 GGACTCTCCGTTGTTGGACGTGACTATTACGGTGTGTTTCCACTGAAGGGCAAACTACTG 11104 Query 13718 AATGTTCGGGACGCTTCGGTGGCACAGCTCACATCA-----AACCAGGAGTTCAACGATC 13772 |||||||| || || | | || |||| || | ||| ||||| || | | Sbjct 11105 AATGTTCGTGAAGC----GAGTCA-TTCTCAAATAATGAAGAACGAGGAGATCCAGAACT 11159 Query 13773 TCAAGAAGATCCTTGGTCT--------TCAACAAGGAAAAGACTACCAAGATGTTTCTGA 13824 | ||||||| | || || | ||||| | || | || |||| || Sbjct 11160 TGGTGAAGATCTTGGGACTCAAGCACGGCCACAAGTATGAGTCAACGAAGA-GT------ 11212 Query 13825 ACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATCAA 13884 || || || || | || ||||| ||| ||||| || |||| || ||||||||| Sbjct 11213 -CTACGTTACGGGCACCTGATGATCATGGCAGATCAGGACCATGACGGCAGTCACATCAA 11271 Query 13885 GGGTCTCATCCTAAATATGATCCACTACTTCTGGCCCAGTCTTCTCAA 13932 |||||| || | ||| | || || |||||||||| |||||| || Sbjct 11272 GGGTCTAGTCATCAATTTTATTCATCACTTCTGGCCGTCTCTTCTGAA 11319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596485908742240