Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2658 134 4e-26 seq869 100 8e-16 seq8114 84.2 6e-11 >seq2658 Length=2378 Score = 134 bits (148), Expect = 4e-26 Identities = 268/394 (68%), Gaps = 6/394 (2%) Strand=Plus/Plus Query 302476 TCAACCTTGATTGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTG 302535 |||||| | || ||| || || || || || || | |||||||||| | | || Sbjct 490 TCAACCCACACTGCGTCCATGCCATCTTCACCATACAAGAACTGAATGATCTCGCCCTGA 549 Query 302536 TTATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGA 302595 ||| | ||||| ||| |||| | |||| | |||||| |||| | |||| Sbjct 550 GCATTGCGGACGGTACCATCGTAACGAGTCATCACCGACTCCATAGCTTTGACAAGACGA 609 Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 |||||||| ||||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 610 CGCTGAATGTAACCCGTTTCAGCGGTCTTGACGGCGGTATCAATCAAACCTTCACGACCA 669 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 ||||| || |||||||| | ||||| ||| || ||| | | ||| | || ||| Sbjct 670 CCCATGGCGTGGAAGAAGAACTCTTGCGGGGTTAAACCCTTCAAGTACGAGTTTTCGACG 729 Query 302716 AAACCACGCGCCTCGGG-CGA--ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC 302772 |||||||| |||||| | | ||| || ||| |||| || || || || Sbjct 730 AAACCACGACTCTCGGGACCAAGATCATC---CTTTCCGTAGTGGGGAAGAGTTCTTCGG 786 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 | |||| || || ||||||||||| || ||||||||||| |||| |||| ||| ||| Sbjct 787 TTGAAGCCATACGGAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATC 846 Query 302833 TGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 || || || || | | ||||||||||||| Sbjct 847 TGGGAGATGTTAATGTACGATCCCTTGGAGCCAG 880 >seq869 Length=8398 Score = 100 bits (110), Expect = 8e-16 Identities = 177/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | |||||| ||| ||||| || |||| || || || || | | | || Sbjct 2911 GGCGATGATACCACAGATATCGCACACGTGCACGCGATACGCGTCCGAGTTGGCGAAGAG 2970 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || || |||| | | ||||| || |||| ||| || |||||||| || || Sbjct 2971 GCGGTCCATGAGGAAGTTGGCCGAGCCGTGCGAGATCAGACAGTCTCGCTCCATCTCTCC 3030 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| |||||||| || || || | |||||| ||||| || || || | || Sbjct 3031 CATACGCAGACCACCTTCTCGCGCACGACCCTCCATGGGCTGGCGCGTCAGCATCGTCAC 3090 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| ||||| || ||| || | |||||||||||||||||||||||||| Sbjct 3091 GGGGCCGCGCGAGCGCGAGTGGATCTTGTCGTCGACCATATGCTTGAGACGCTGGTAGAA 3150 Query 251643 TGCGGGACCGATGAAGAT 251660 | || ||||||||||| Sbjct 3151 CGTCGGGCCGATGAAGAT 3168 >seq8114 Length=481 Score = 84.2 bits (92), Expect = 6e-11 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 409107 CTCC-ATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGTTCGAAA 409165 |||| |||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| Sbjct 2 CTCCTATAGCTCAGTTGGT-AGAGCGTGTGGCTGTTAACCGCAAGGTCGCCGGTTCGAAC 60 Query 409166 CCGGTTGG 409173 |||| ||| Sbjct 61 CCGGCTGG 68 Score = 84.2 bits (92), Expect = 6e-11 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 409298 CTCC-ATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGTTCGAAA 409356 |||| |||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| Sbjct 2 CTCCTATAGCTCAGTTGGT-AGAGCGTGTGGCTGTTAACCGCAAGGTCGCCGGTTCGAAC 60 Query 409357 CCGGTTGG 409364 |||| ||| Sbjct 61 CCGGCTGG 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471605960448151