Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1222 129 6e-25 seq2426 123 3e-23 >seq1222 Length=6011 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || ||||||||||| || |||| | Sbjct 2200 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 2141 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || |||| ||||||||||| || || || || || Sbjct 2140 CCGTCCTCGAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCC 2081 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| || ||||| |||| || | || |||||||| || Sbjct 2080 TTGTCCTGGATCTTCTGCTTGACATTGT-CAATGCTGTCCGAAGGCTCGACGTCGAGCGT 2022 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 || || || ||||| | ||| || ||||| || |||| Sbjct 2021 GATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCA 1984 >seq2426 Length=2661 Score = 123 bits (136), Expect = 3e-23 Identities = 917/1450 (63%), Gaps = 71/1450 (5%) Strand=Plus/Plus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 |||||| || || || ||| | |||| || ||||| ||||| ||| | ||||| Sbjct 774 CGCGGAGCGTCCGCAGCAGATGATTCTGCGTGTCGCGGTCGGCATCCACAAGCACGACAT 833 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT----ACGCACGCTT 7666 ||||||||| | || |||||| | ||||| | || || || |||||||| Sbjct 834 TGACGCCGCGCTCGAGACGTACGAGTACATGTC---GCAA-AGCTTCTTCACGCACGCGA 889 Query 7667 CGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT-CAATTGTCCTCGTGTTTTTTGCTA 7725 |||| || |||| ||||||||| |||||| || |||| ||||| || |||| Sbjct 890 CGCCGACGCTGTTCAACGCGGGCACGC-CGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTC 948 Query 7726 ACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATT 7785 ||||| || ||| ||||| ||||| ||| ||||||| | ||||| || Sbjct 949 GCCATGAAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATC 1008 Query 7786 TCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC---CAACG-GTAG 7841 ||||| | | ||||| || || | | ||| || || | ||||| |||| ||| Sbjct 1009 TCCAAGTGGGCTGGCGGCATCGGCGTCAGCGTGCACAACATCCGCGCGACCAACTCGTA- 1067 Query 7842 CCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAA 7901 |||| ||| ||||| | | ||| | | ||||||| ||||||| ||||| Sbjct 1068 ---CATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTCTTCAA 1124 Query 7902 TAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTA 7958 || ||| ||| | || |||||||| || |||||||| ||| | || || || Sbjct 1125 CGACACGGCGCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTA 1184 Query 7959 TTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGC-GTCGCAACATGGGTT 8017 |||||||||||||||| ||||| | || | || | || | | | || || Sbjct 1185 CCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGGACCTCAAGAAGAACCACGG--- 1241 Query 8018 GCGAAGA-CAGCAAAGCGCGCG--ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTA 8074 | | || | ||| ||||||| |||| |||| || ||||| | |||||||| || | Sbjct 1242 -CAACGAGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTCTTCA 1300 Query 8075 TGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTAT 8134 ||| |||||| | | ||| | ||| || | ||||| || || || | Sbjct 1301 TGAAGCGCGTCGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCC-GAACGAGGCGCCGGGG 1359 Query 8135 ---TAAAAAACGTTTACGGTTCAA--AATTTGAACAATTGTACAAACAATACGAACACGA 8189 || | |||| || | | | || || ||||| | || ||||| | ||| Sbjct 1360 CTCTACACGACGT----GGGGCGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGA 1415 Query 8190 CGGCGCGTACGTGCGGCAAGTGAAAGCGCGCG-ACCTGCACCG---CGCCATTATCGAAT 8245 ||| || || ||| |||| | |||||| | | || | | ||| || |||| | Sbjct 1416 GGGC-CG--CGCGCG-CAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGT 1471 Query 8246 GTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCA 8305 || | ||| || || | |||||||||||||||||| ||| | |||||| ||| | Sbjct 1472 CGCAGATCGAGACAGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGA 1531 Query 8306 ATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACA 8365 | || ||| | ||||| || | | ||||| || ||| || | | |||||| Sbjct 1532 ACCAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACA 1591 Query 8366 GCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG----TGTTTAAACGCGTTC 8421 ||||||| || || || || ||||| || ||||| | ||| || ||| Sbjct 1592 CGTCGCCCGATGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAA----GTTT 1647 Query 8422 GTTGATCGACGCTCAAACACTTACGACTTT--GAA-CAATTGAAAAACGCCGTGCAAGTG 8478 || || ||||| | || || ||||| ||| | | | | | || | || Sbjct 1648 GT-GACCGACGACAAGACCTTT--GACTTCAAGAAGCTCTACGACATCACCAAGGTCGTC 1704 Query 8479 ACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC-GCG 8537 ||| ||||| | | |||| || |||| | || || | || || | | Sbjct 1705 ACG---CGCAACCTGAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAG 1761 Query 8538 CGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTT 8597 || | | ||| |||||||| | || | ||| | |||||||| ||||| || |||||||| Sbjct 1762 CGCAGC-AACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTT 1820 Query 8598 TGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGC 8657 | | || || | | | ||| ||| | || || ||| |||||||| || || Sbjct 1821 CATCCTCATGGGCTACGCGTTCGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTT 1880 Query 8658 GGAAACGGTGTATTACGGCGCATTAGAAGCCA-GCTGTCAACTTGCCCGAGAATTGGGCA 8716 || ||| |||| | ||||| | || ||| | || | || || || || ||| Sbjct 1881 CGAGACGCTGTACTTTGGCGCCATGGAGGCCTCGATGG-AGCTCGCGCGGGAGCATGGCC 1939 Query 8717 CGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGA 8776 |||||| |||| ||| || | ||| || || || || | |||||||||| Sbjct 1940 CGTACGGCAGCTACGAGGGTTCGCCCGTGAGCAAGGGCATCTTCCAGTTCGACATGTGGG 1999 Query 8777 ATGTCACGCCCACCTC---TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAAT 8833 |||||||| || || | | ||| | ||| || | || | | || || | Sbjct 2000 GCGTCACGCCGACGTCGGGTCTCTGGGACTGGGCCGCGCTCAAGGCGAGCGTCGCGCAGT 2059 Query 8834 TCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAA 8893 ||| ||||||| |||||| || | || ||||| || || ||||||| || || Sbjct 2060 ACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACTGCGCAGATCC 2119 Query 8894 TGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGG 8953 | || |||||||| || | ||||||||||| | |||| ||||| | || ||| | | Sbjct 2120 TCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTCG 2179 Query 8954 CCGGCGATTT 8963 ||||||| || Sbjct 2180 CCGGCGAGTT 2189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505327498921960