Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq18 95.1 1e-14 >seq9 Length=143240 Score = 98.7 bits (108), Expect = 8e-16 Identities = 288/435 (66%), Gaps = 9/435 (2%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 ||||| || || ||||||||||| || ||||| || || | | | | || ||| Sbjct 120507 GCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGA-TGAACTTCAGCAG 120449 Query 43916 -GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 || || || | || || || || || || ||||| || || || ||||| || || || Sbjct 120448 CGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACAT 120389 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 || ||||| ||||| || || || |||||||||||||| || | |||||| | Sbjct 120388 CCACTCGGAGGTGTACTCGCTGCTCATTGATACGTACATCAAGGACCAGACGGAGAAGAA 120329 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | | ||| || || || | || |||| | | | || || ||||||| | Sbjct 120328 CCACCTTCTCCGTGCCATCGAGACCATTCCATGCGTGCAGA-AGAAGGCGCACTGGGCGC 120270 Query 44094 TTAAATGGATAAATTCAAAT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | || ||| | || | |||||| || || |||||||||| || | | Sbjct 120269 TCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGCTGCCG 120210 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 | || ||||||||||| || || ||||| ||| |||| || ||| | ||||| || ||| Sbjct 120209 TTGAGGGCATTTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGCGTGGT 120151 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 | |||||||| | | || || || ||| | || |||||||| ||| | || || Sbjct 120150 CTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCCTCCACTGT 120091 Query 44270 GATTTTGCTTGCTTG 44284 || || |||||| || Sbjct 120090 GACTTCGCTTGCCTG 120076 >seq18 Length=101766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || || || || ||| || |||||||| ||||| | | |||||| |||| || Sbjct 82520 CGGCGCATCATCATGTCGGCATGGAACCCTGCGGACCTCAAGGAGATGGCTCTGCCGCCG 82461 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || |||| || |||||||||||| |||||||| || || ||||| |||| ||| Sbjct 82460 TGCCACATGTTCTGCCAGTTTTACGTTGCGAATGGTGAGCTCTCCTGTCAGATGTACCAA 82401 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 | |||| || ||||| || || || || || ||||| ||||| || || ||| | ||| Sbjct 82400 CGCTCAGCAGATATGGGTCTCGGCGTGCCATTCAACATCGCGAGCTACGCGCTGTTGACG 82341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397401635844115