Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2426 203 4e-47 seq9 120 4e-22 seq79 84.2 3e-11 >seq2426 Length=2661 Score = 203 bits (224), Expect = 4e-47 Identities = 571/861 (66%), Gaps = 17/861 (2%) Strand=Plus/Minus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 1553 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTAC 1494 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| || ||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 1493 GGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 1434 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| || | Sbjct 1433 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCGC 1376 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | |||| || || |||| || || ||||| || ||| | || Sbjct 1375 CCCACGTCGT-GTAGAGCCCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 1317 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 |||| || ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 1316 GCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 1257 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 111671 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 1256 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCCAGGAACTCGAAGATGTCGGCGT 1199 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 111728 |||| ||||| || || | |||| || ||||| || ||| | | || | || | Sbjct 1198 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGT 1139 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 ||||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 1138 AGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 1079 Query 111789 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 | || || || ||||| || | || | | | || | | | || || || || Sbjct 1078 TGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCC 1021 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 ||||||||| ||||| ||| |||| | | || || | ||||| || | ||| ||||| Sbjct 1020 AGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTC 961 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 960 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAA 901 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 900 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 841 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 | |||||||| | | ||||||||||| ||||| |||| | ||| | ||| || Sbjct 840 GGCGTCAATGTCGTGCTTGTGGATGCCGACCGCGACACGCAGAATCATCTGCTGCGGACG 781 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 ||| || |||| ||| || | || || |||||| || || |||| ||||| Sbjct 780 CTCCGCGACCTTGCCGCCGACGCGGAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 721 Query 112147 GTAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 720 GTAGTCGTACTCAAAGTCGCG 700 >seq9 Length=143240 Score = 120 bits (132), Expect = 4e-22 Identities = 352/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 119795 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 119854 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGC-ACCCCAACTTGTTTGAGGAGACG 122489 ||||||| || ||| | || |||| |||| || |||| | |||||| || Sbjct 119855 CAGTCAAACGGGTTCGAGACCTTGTAAATCT-TGGCGACACCAAGCGCATGGAGGAGGCG 119913 Query 122490 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | || | |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 119914 ATCGGCGCAGA-ACTCGATGTACTGGCACATAAGCGACGAGTTCATGCCGATCAGCTCGA 119972 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 || || | |||| || |||| | ||||||||| | || || || | ||| | | Sbjct 119973 CCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTCAT 120032 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCA 122661 |||| | ||| || || | || ||| |||| || | || | || Sbjct 120033 GGATGCGCGACTCCGGGAGCTTGT---TGAC---AAG-CTTGGAGTACAGCAGGCAAGCG 120085 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||||| |||||||| || || || || || || ||||||| || || ||| Sbjct 120086 AAGTCACAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 120145 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | || | |||||| || || |||||||| || ||| Sbjct 120146 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATGCCC 120205 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGC-GAAGGAGCGAGACTTTGCATCAAACCA 122840 || || || ||||| | || ||| || || ||| ||| | | | || |||| Sbjct 120206 TCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCACCA 120264 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || | ||||| | ||||||||||| | ||||| | || | |||||| Sbjct 120265 CTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGC 120315 >seq79 Length=46062 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 182706 AGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTT 182765 ||||| ||||||||||| | ||||| ||||| || ||||| || | |||| ||| Sbjct 11088 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 11029 Query 182766 TTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCC 182825 || || || || ||||| || | |||||| || || ||| | | || ||||| || Sbjct 11028 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 10969 Query 182826 TTGTTCGCGTCATCCAACTTGGGAATACCGGTAATTTTGGACTT 182869 | |||||| || || | ||| ||||| ||||| | || ||||| Sbjct 10968 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627943894960800