Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2426 269 3e-67 seq9 196 6e-45 seq79 93.3 5e-14 >seq2426 Length=2661 Score = 269 bits (298), Expect = 3e-67 Identities = 1121/1744 (64%), Gaps = 61/1744 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| |||| |||||| || || | ||||| || | | Sbjct 2507 CGCAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTC 2448 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| || || || | ||| | ||| | ||| || |||| || Sbjct 2447 AGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAG 2388 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || || || || ||||| |||| |||| ||||| |||||| |||||||| ||| || Sbjct 2387 GCGCCGCGGTCAGCGGCCATGTCAAGCACAGCCTTCTGCTTGATCTCCCACACGGTCTTG 2328 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATC---CACGATATTTTGGATGGATCCACCCGCC 118073 || | ||| | | || ||||| | |||| || || | || || | Sbjct 2327 TACTTCTCCTTCACGGCGTCCGGGATCACGCGCACG---TTCTGCACCGAGCCGTGGTCG 2271 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | || || | | || || | ||||| || | || |||| |||| || | Sbjct 2270 TGGAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATG 2211 Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 || | ||| || || | ||||| || ||||| ||| | || || |||||| Sbjct 2210 AGGTACTTGTTCACGATCGTGAACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTC 2151 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||| | ||||| | |||| ||||| || | ||| || || || || || || ||||| Sbjct 2150 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATC 2091 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | || || ||| || | || | | | | || ||||||| ||| || Sbjct 2090 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCC 2031 Query 118314 CAGTCGTAGTTGAGCTTTGTC-TCCCCCTG-----CCACATATCAAACTGGAGGATACCT 118367 ||||| || || | | | || | || |||||| || ||||||| ||| || Sbjct 2030 CAGTCCCAGA-GACCC--GACGTCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCCC 1974 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG--- 118424 | | | | ||||| ||||| | | | || ||||| | || ||| | || Sbjct 1973 TTGCTCACGGGCGAACCCTCGTAGCTGCCGTACGGGCCATGCTCCCGCGCGAGCTCCATC 1914 Query 118425 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484 ||| ||||| | ||| | |||| || || || ||| || | | | Sbjct 1913 GAG---GCCTCCATGGCGCCAAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGG 1857 Query 118485 GCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGA 118542 ||||||||| || |||||| || | || | || || | ||||||||||| || | Sbjct 1856 GCCTCGTCGCTCTCGAACGCGTAGCC--CATGAGGATGAACGCGTCCGCGAGACCCTGCA 1799 Query 118543 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGAT 118599 | |||| ||| || ||||| || | || || | || ||| ||| | || | Sbjct 1798 CGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TGCGCTCGGCCTCGGGGATCGGGT 1742 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 118659 | | || | ||||| ||| | || || || ||||| ||||| ||||| || | | Sbjct 1741 AGTAGTTGATGTCGATGACCTTGTTCAGGTTGCGCGTGACGACCTTGGTGATGTCGTAGA 1682 Query 118660 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 118719 |||| | | | ||||| | | || || | ||| |||| | || ||||| |||| Sbjct 1681 GCTTCTTGAAGTCAAAGGTCT---TGTCGTCGGTCACAAACTTGGACAGCGCGATGGACG 1625 Query 118720 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGT 118779 | || || ||||| | | |||||| |||||||| | | || ||| | || Sbjct 1624 CGAGGTTGCACACCGCGACCTCATCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGT 1565 Query 118780 TTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 | ||| || ||||| | ||||| || || ||||| ||| |||| |||| Sbjct 1564 TG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCT 1508 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| |||||||| ||||| || ||||| | || |||| ||| || || ||||| Sbjct 1507 TGTACAGCATGTACGGCGTGCCTGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA--- 1451 Query 118897 CGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || |||| || | | | | ||| || || ||||| |||||||| ||| || Sbjct 1450 --GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAG 1393 Query 118952 GGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 || || ||||| || ||| ||| | | | ||||||| || |||| | |||||||| | Sbjct 1392 CGCCTCGAACTCGTCGCCCCACGTCGTGT-AGAGCCCCGGCGCCTCGTTCGGGCAGAACA 1334 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | || |||| || |||||||||||||| || |||||||| | ||| Sbjct 1333 GGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGATCCACATCGCGT 1274 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||||||||| || ||| || || | | || || || | |||| || Sbjct 1273 AGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCCAGGAAC 1215 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGA 119186 || | ||| || ||||||||||| |||||||||| ||||| || ||||| || | Sbjct 1214 TCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTGCCG 1155 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||||| || || | ||| ||| |||| || || || ||||| || | || || Sbjct 1154 CCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGAGGCCG 1095 Query 119247 TCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | || ||| || || || || || ||||| || | || | || | ||| | | Sbjct 1094 TTCGACGAGCCGTTCGTGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGC 1037 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | || || || || |||||||| ||||| |||||||| | |||| || |||||| Sbjct 1036 TGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGA 977 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||||||||| |||| | |||| |||||||| ||||| || || | | Sbjct 976 TGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 917 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGT 119484 | || || |||||||| || || || |||||||| |||| | | ||| ||||| | | Sbjct 916 GCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACT 857 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 |||| ||||| | ||||| |||||| | | ||| || |||| || ||| |||| || Sbjct 856 CGTACGTCTCGAGCGCGGCGTCAATGTCGTGCTTGTGGATGCCGACCGCGACACGCAGAA 797 Query 119545 ACAT 119548 ||| Sbjct 796 TCAT 793 >seq9 Length=143240 Score = 196 bits (216), Expect = 6e-45 Identities = 403/585 (69%), Gaps = 26/585 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 119795 TACTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 119854 Query 129788 AAATCAAATGGGTTCTTTGAG---TTCCAAATTGCTGGC-ACTCCAATCTGTTTGAGGAG 129843 | ||||| |||||| ||| || |||| |||| || |||| | | |||||| Sbjct 119855 CAGTCAAACGGGTTC---GAGACCTTGTAAATCT-TGGCGACACCAAGCGCATGGAGGAG 119910 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 ||||| | | | |||| ||||||| |||| | |||||||| ||||| || | Sbjct 119911 GCGATCGGCGCAGAACTCGATGTACTGGCACATAAGCGACGAGTTCATGCCGATCAGCTC 119970 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || |||| |||| || |||| |||||||||| | || || || || | ||| | Sbjct 119971 GACCGGAAGCGAGTCCTGGACGAACTCCTTCTCAATCGCGACGGCATCGCGAATGATCTC 120030 Query 129964 GTGAATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAA 130019 || ||| | ||||| | || | | ||| ||| |||| |||| | | ||||| Sbjct 120031 ATGGATGCGCGACTCCGGG--AGCT-TGTTGAC--AAG-CTTG--GAGTACAGCAGGCAA 120082 Query 130020 AC----TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 | || |||||| ||||| ||||| |||||||| || |||||||||| || || Sbjct 120083 GCGAAGTCACAGTGGAGGCCCTCATCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCA 120142 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| |||||||| | |||||| || | || || ||||| |||||||| || Sbjct 120143 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAAATG 120202 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAA 130194 ||||| || |||||||| | | |||||||| |||| ||| | | | || | Sbjct 120203 CCCTCAACGGCAGCGAACGCGACAATGCGCTCAGCAAAAGCCGCGCGGC-GCGAGTCGCA 120261 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 |||||| | |||||| |||||||| |||| | || || | ||||| ||| || | Sbjct 120262 CCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACGCATGGAATGGTCTCGATGGCACGGAG 120321 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || | ||||| || | | || ||||||||| |||| ||||| Sbjct 120322 AAGGTGGTTCTTCTCCGTCTGGTCCTTGATGTACGTATCAATGAG 120366 >seq79 Length=46062 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 179965 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 180024 || || ||||||||||| | ||||| ||||| || ||||| ||| | ||||| |||| Sbjct 11088 AGTGGAAACACACCGTAATAGTCACGTCCAACAACGGAGAGTCCACTGATTGCGAAGGTC 11029 Query 180025 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCC 180084 || || || || ||||| |||| |||||||| || ||| | | || || || || Sbjct 11028 TTGGCTGATTCGCCCTCAGTCAAAATGAGCGTGCAGTTTTGACCCTTCGCTGTACCAGCG 10969 Query 180085 TTGTTCGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 180128 | |||||| ||||| | ||| ||||| || || | || ||||| Sbjct 10968 TAGTTCGCATCGTCGAGCTTCGGAATTCCGGTGAGCTTCGACTT 10925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618348441271880