Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1400 168 2e-36 >seq1400 Length=5252 Score = 168 bits (186), Expect = 2e-36 Identities = 931/1472 (63%), Gaps = 18/1472 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | || ||||| || || || || || Sbjct 3295 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTCGAG 3236 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || || |||||| | || ||||| || ||||| || || || || || Sbjct 3235 ATCATTGCCAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCCTTCACGGACACG 3176 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | || || | | || ||||| Sbjct 3175 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACGCCACGAACACGGTG 3116 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || |||||||| || ||||| | ||||| | | || | || |||| | Sbjct 3115 TTCGACGCTAAGCGTCTCATTGGCCGCAAGTTCAGCGACCCGATTGTC-CAGGCTGACAT 3057 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | || || || || || | |||||| || || || ||| | Sbjct 3056 CAAGCACTGGCCGTTCACGGTGTCGCCGGGCGCCGGTGACAAGCCGCAGATCACGGTCCA 2997 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 2996 GTTCAAGGGCGAGTCGAAGACG-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 2938 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| || | | || | || | | || || ||||| | Sbjct 2937 AGATGCGTGAGGTCGCTGAGGCCTTCATTGGCAAGGAGGTCAAGAACGCCGTCATTACGG 2878 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || ||||||||| ||| || | Sbjct 2877 TCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACGAAGGATGCTGGCGCCATCGCCG 2818 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || ||||| || ||||| ||||| || ||||| || || |||| Sbjct 2817 GCCTCAACGTGCTCCGTATCATTAACGAGCCCACGGCTGCCGCCATTGCCTACGGTCTTG 2758 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | ||| || || | || || || ||| | ||||| ||||| || | Sbjct 2757 ACAAGAAGGGTGGT---GAGCGCAACGTGCTCATCTTCGATCTTGGTGGCGGTACCTTCG 2701 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| || || || || || || || |||||||| | Sbjct 2700 ATGTGTCGCTCCTGAGCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACGGCTGGTGACA 2641 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||||||||||| || ||||| || || || ||||| || || || || | Sbjct 2640 CGCATCTTGGTGGTGAGGATTTCGACAACCGCCTCGTCGACCACTTCACGGCCGAGTTCA 2581 Query 349923 AGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| ||||| | || | ||| || | | || | ||||| || | || Sbjct 2580 AGCG-CAAGCACCGCAAGGACCTCACGAG-CAACCAGCGTGCTCTCCGTCGTCTGCGTAC 2523 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || || || || |||||||| | | || || | |||| ||| || || ||||| Sbjct 2522 GGCCTGCGAGCGCGCTAAGCGCACGCTCTCGTCGTCGGCCCAGGCCTACATCGAGATTGA 2463 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || ||||| || ||| || | || || |||||||| || || || | Sbjct 2462 CTCGCTCTTCGATGGTGTCGACTTCAACTCGACCATCACGCGTGCTCGTTTCGAGGACCT 2403 Query 350101 ATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 || ||| || || ||| || ||||| ||||| || || || | || || Sbjct 2402 CTGCGCGGA-CTACTT-CCGCAAGACGATGGAGCCTGTTGAGAAGGTGCTTCGTGACGCC 2345 Query 350159 AAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCA 350218 || | || || | ||| | | || || || | || ||||| || || ||||| || Sbjct 2344 AAGCTCTCGAAGAGCCAGGTGCACGAGGTCGTCCTTGTCGGTGGCTCGACCCGTATCCCG 2285 Query 350219 AAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAAT 350278 || || || ||| | || || || || || || ||||| || |||| | || || || Sbjct 2284 AAGGTCCAGCAGCTCCTGTCGGACTTCTTCAACGGCAAGGAGCCTTGCAAGTCGATCAAC 2225 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGGAAATAA 350337 || ||||| |||||||| | ||||| | || ||||| |||| | | | | || | Sbjct 2224 CCTGATGAGGCTGTTGCCTTCGGTGCCACGGTCCAGGCTGCTATCCTCAGCGGCAACGAC 2165 Query 350338 GAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| | || | | ||||| | || || ||||| || || || ||||| || | Sbjct 2164 CAGTCGGAGAAGCTCCAGGATCTGCTCCTCCTCGATGTGACCCCGCTGTCGCTCGGTCTC 2105 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || | |||| || ||||| || || || | || | || || ||||| || Sbjct 2104 GAGACGGCCGGTGGTGTCATGACGACGCTGATCCCGCGTAACACGACGGTGCCTACCAAG 2045 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || || || || || | || || || ||||| | || || || || || Sbjct 2044 AAGACGCAGACGTTCTCGACGTACGCCGACAACCAGCCTGGTGTGCTCATCCAGGTCTTC 1985 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || ||||| ||| | || || || || || || | || | ||| | Sbjct 1984 GAGGGTGAGCGTTCGATGACGCGCGACAACAACCTCCTCGGCAAGTTCAACCTCGACGGT 1925 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || ||||| | || || || ||||| || ||| | ||||| |||||| | || Sbjct 1924 ATCCCGCCGATGCCGCGTGGTGTGCCGCAGATCGACGTCACGTTCGACATTGATGCCAAC 1865 Query 350636 GGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 ||||| | || || | || ||||| || || Sbjct 1864 GGTATCCTGAACGTGTCGGCCGTTGAGAAGTC 1833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515036514467069