Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2426 383 2e-101 seq1467 187 3e-42 seq1222 156 5e-33 seq9 104 3e-17 seq276 98.7 1e-15 >seq2426 Length=2661 Score = 383 bits (424), Expect = 2e-101 Identities = 1108/1682 (66%), Gaps = 45/1682 (3%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 ||||| | |||||| | | |||||| | ||||| ||||| |||||||||||||||||| Sbjct 2543 ACCGTGAACTGAATCGCGTCGGCCTTCGGTCGCGTGCGCAGGTAGTACATGCCCGTCTTG 2484 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || ||||||||||| |||| | |||||| || | ||||| | || || | | | Sbjct 2483 AGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCG 2424 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 ||| | ||| || ||||| ||| |||||| | || || || || || ||||| ||| Sbjct 2423 ATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCAGCGGCCATGTCA 2364 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATAC-----TGTACGATACACCTT-ACGAAGCTCC 80238 | | | ||| || || ||||| || ||||| | | |||| ||| | ||| Sbjct 2363 AGCACAGCCTTCTGCTTGATCTCCCACACGGTCTTGTAC--TTCTCCTTCACGGCG-TCC 2307 Query 80239 TCTGGA--ATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAATT 80296 ||| | | || || ||||| ||| ||| | | || || || || | Sbjct 2306 G--GGATCACGCGCACGTTCTGCACCGAGCCGTGGTCGTGGAGGATCTGGTTGCGCACCT 2249 Query 80297 CAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAA 80356 | | |||||||| || |||| | || || |||| |||| |||||| | || | Sbjct 2248 CGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATGAGGTACTTGTTCACGATCGTGA 2189 Query 80357 ACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGT 80416 |||| || ||||| ||| || |||| ||| || ||| | ||||| | | ||||| Sbjct 2188 ACTCGCCGGCGAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGT 2129 Query 80417 TGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCC 80476 |||| ||||||||||| || || ||||||||||||||| ||| || ||| || || | Sbjct 2128 TGTTGCCGAGGATCTGCGCAGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGC 2069 Query 80477 GCAGGCCGTGCTTCTTGA---TATCCTCG--CGCAAATCTGACCAAAAATCAACCCCAA- 80530 ||| ||||| || | || | ||| | ||| | | || | | |||| | Sbjct 2068 GCACGCCGTACTGCGCGACGCTCGCCTTGAGCGCGGCCCAGTCCCAGAG---ACCCGACG 2012 Query 80531 -CGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 || ||||| ||||||||||| ||| |||||||||| | | || || ||| || Sbjct 2011 TCGGCGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTCACGGGCGAACCCTCGT 1952 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGT 80644 | | |||||||||| | | | || ||||| ||| |||||| ||| | Sbjct 1951 AGCTGCCGTACGGGCCATGCTCCCGCGCGAGCTCCATCGAGGCCTCCAT---GGCGCCAA 1895 Query 80645 GATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCT-GTGGGTCGTCGAACGAC 80703 || | ||| |||| | |||||| | |||| |||| || | || ||||||| Sbjct 1894 AGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTC-TCGAACGCG 1836 Query 80704 AAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGG 80763 ||||||| | |||||| |||| || || ||||| ||||||||| |||||||||||||| Sbjct 1835 TAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGG 1776 Query 80764 CGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTC 80823 ||| ||| ||||||||||| || || ||||| |||| | |||||||| |||| Sbjct 1775 CGCAGGTTGCTGCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTC 1716 Query 80824 AGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTGGTTC 80880 |||||||| || || ||| || | || | || |||| ||||| || | || Sbjct 1715 AGGTTGCGCGTGACGACCTTGGTGATGTCGTAGAGCTTCTTGAAGTCAAAGGTCTTGTCG 1656 Query 80881 CCCTTCACAAATGCCGGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTCAGC 80939 | ||||||| ||| || | | |||||| || |||||||| || ||||| || | Sbjct 1655 TCGGTCACAAA-CTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCATCGGG 1597 Query 80940 ATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTT 80999 || |||||| | || ||| | || || || || || ||||| | Sbjct 1596 CGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTG 1537 Query 81000 CTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGAC 81059 |||||| |||||| |||||| | ||||||||| ||||||||| || || ||||||| Sbjct 1536 CTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCTGTCTCGAT 1477 Query 81060 CTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCC 81119 ||| |||| |||||| ||| ||| | || |||| || | |||||| ||| Sbjct 1476 CTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCC 1417 Query 81120 TTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT-GAGG 81177 ||| | | |||| | ||| ||| | ||||||| | | || | || || ||| Sbjct 1416 CTCGCGCTCGTACTGGTGGTACAGC-GCCTCGAACTCGTCGCC-CCACGTCGTGTAGAGC 1359 Query 81178 TCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATG 81237 | || |||||| ||||| | |||| ||| ||| || | ||| || ||||||| Sbjct 1358 CCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCGACGCGCTTCATG 1299 Query 81238 AAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCC 81297 || || |||||||| | ||| ||| || || || ||| | ||| | || Sbjct 1298 AAGAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCG 1239 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 ||||| | || || || || | |||||| || ||||| |||||||| |||| Sbjct 1238 TGGTTCTTCTTGAGGTCCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATC 1179 Query 81358 GCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 |||| ||| |||||||| | ||| ||||||| |||||| || || || |||| || Sbjct 1178 GCGAACGAGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCCGTGTCGTTGAAG 1119 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || |||| ||| || | || || | ||| |||||||| || ||| ||| Sbjct 1118 ACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTG 1059 Query 81475 TTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCA 81534 | ||||| | ||| | | |||||||| || | |||||| || || || Sbjct 1058 GTCGCGCGGATGTTGTGCACGCTGACGCCGATGCCGCCAGCCCACTTGGAGATGCACGCG 999 Query 81535 CACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA 81594 ||| | || | || || || || |||||||| || | |||||| | |||| ||| Sbjct 998 CACTGCTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAG 939 Query 81595 CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 || |||| ||| |||| | ||| || |||||||| || || |||||||| || Sbjct 938 CACGACGACAGCTGCGGGCGCGGCGTGCCCGCGTTGAACAGCGTCGGCGTCGCGTGCGTG 879 Query 81655 AA 81656 || Sbjct 878 AA 877 >seq1467 Length=5004 Score = 187 bits (206), Expect = 3e-42 Identities = 305/433 (70%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||||| |||||||| ||| || |||||||||||| | | ||| ||||| ||| || Sbjct 4258 CGTGGTCGACGGCCTGAAGGTCTCGCAGCGCAAGGTGCTCTTCGCGTGCCTGAAGCGCAA 4199 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAG--AGCAAACGGCC 32094 ||| ||| || | ||||| |||||||| | |||||| |||| |||| || || Sbjct 4198 GCTGACGAAGGAAGTCAAGGTCGCGCAGCTCGCTGGCTACT--GCAGTGAGCACACTGCG 4141 Query 32095 TATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTC 32154 || |||||||||||||||||||| || || || |||||| | || ||| ||| ||| Sbjct 4140 TACCACCACGGCGAGGCGTCGCTGCACTCGACGATCGTCAACATGGCGCAGGACTACGTC 4081 Query 32155 GGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGT 32214 || || || |||||| | ||| | ||||| ||||||||||| || ||||| || Sbjct 4080 GGCGCCAACAACCTGCCGCTGCTCTATCCATCGGGACAGTTTGGCACGCGGCTGCAGGGA 4021 Query 32215 GGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCA-CCTTCGACGCGCAA 32273 |||||||| || ||||| | || ||||||||||| | || ||| | ||||| Sbjct 4020 GGCAAGGACGCCGCGAGTCCGCGCTACATCTTCACGCTGCT-GCAGAAGTACACGCGGCT 3962 Query 32274 GATTTTCGACCCGTCG--GACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGG 32331 | | ||| |||| | ||||| ||| |||| || ||| ||||| || | | Sbjct 3961 GCTGTTC--CCCGAGGACGACGACGCGCTGCTGAACTACGTGGACGATGATGGATACCCC 3904 Query 32332 GTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGC 32391 || |||||| | ||| ||| | || |||||| | ||| | ||||| ||||||||| Sbjct 3903 GTGGAGCCGCACTACTATGTGCCGATCCTGCCGATGCTGTTGATCAACGGCGCAGAAGGC 3844 Query 32392 ATCGGAACGGGGT 32404 ||||| || |||| Sbjct 3843 ATCGGCACTGGGT 3831 >seq1222 Length=6011 Score = 156 bits (172), Expect = 5e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| ||||| |||||||| || ||||||||||| || || || || || ||| | | Sbjct 1984 TGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCGG 2043 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | ||||||| ||| | ||| || || ||||||||||||||||| ||||| || |||| Sbjct 2044 ACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAGC 2103 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || || || ||||||||||| |||||||| | || ||||| | ||||| || Sbjct 2104 AGCGCCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACA 2163 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || || ||||| Sbjct 2164 TCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGTGGTGG 2209 >seq9 Length=143240 Score = 104 bits (114), Expect = 3e-17 Identities = 352/541 (65%), Gaps = 7/541 (1%) Strand=Plus/Minus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | |||||||| || || || |||||||| | ||||||| | ||||||| Sbjct 120632 TGTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTCG 120573 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || |||| || |||| ||||| | | ||| || | ||||| |||||| Sbjct 120572 TGCACGACCTCAAGGATTGGGGCAACCTCA-CGGACAACGAGCGCCACTTTATCAAGCAC 120514 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 ||||| || |||||||| | || ||||| || || ||||| | | | || || Sbjct 120513 GTCCTCGCGTTCTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCGCGATGAACTTC 120454 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | | || || ||| | || |||||||| | ||||||| | ||| | || Sbjct 120453 AGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAGATCGCCATTGAG 120394 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCG-A 64616 | || || ||| ||| ||||| | ||||| | || | ||| || | || | Sbjct 120393 AACATCCACTCGGAGGTGTACTCGCTGCTCATTGATACGTACATCAAGGA-CCAGACGGA 120335 Query 64617 GAAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATG 64676 |||| | || || | || || ||||| | || || || ||||| | || Sbjct 120334 GAAGAACCACCTTCTCCGTGCCATCGAGACCATTCCATGCGTGCAGAAGAAGGCGCACTG 120275 Query 64677 GGCCATCCGGTGGAT-GAATCGTG--GGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGC 64733 ||| || |||| || ||| | | || | |||| | |||| | | || || || Sbjct 120274 GGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATTGTCGCGTTCGC 120215 Query 64734 CTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCG 64793 || || || |||||||| || || || ||||| || || |||||||| || ||||| Sbjct 120214 TGCCGTTGAGGGCATTTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCG 120155 Query 64794 GGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCA 64853 || || ||||| || || || ||||||||||| ||||| || || ||||| ||||| Sbjct 120154 TGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGATGAGGGCCTCCA 120095 Query 64854 C 64854 | Sbjct 120094 C 120094 >seq276 Length=21382 Score = 98.7 bits (108), Expect = 1e-15 Identities = 236/362 (65%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||| |||| || || | || ||| ||||||||| ||||||| || |||||||| Sbjct 3385 GAGATCTACAATCTCGCCGCGATGTCGCACGTCAAGGTGTCGTTCGAGATGTCCGAGTAC 3326 Query 24645 ACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNNN 24704 |||||| |||| || || || ||||| || || | || | || ||| Sbjct 3325 ACGGCCGACGTCGACGCGCTTGGCACACTGCGACTGCTCAACTGCATCCGCACGTGCGGC 3266 Query 24705 NNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAG 24764 || || |||||||||||| || || ||| | | ||||| |||||| Sbjct 3265 ATGGAGAAGACGACCAAGTTTTATCAGGCGTCGACCAGCGAGCTCTACGGCAAAGTGCAG 3206 Query 24765 GAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAG 24824 | ||||| ||| ||| ||| || ||||| ||||| || || || ||| | ||| Sbjct 3205 GCCACGCCGCAGAACGAGCTCACGCCGTTTTACCCGCGCTCGCCCTACGGTGTCGCCAAG 3146 Query 24825 GTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAAC 24884 ||| |||||||||| | ||||||||| ||||| | || || | ||| ||| Sbjct 3145 CAGTTTGCGTACTGGAGCGTCGTGAACTACCGCGAGGCGTACGGCATGTTTGCCGTGAAC 3086 Query 24885 GGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCTGAATTTGTTACACGAAAGATT 24944 || || || || ||||| ||| ||| || ||||| ||||| || || |||||| Sbjct 3085 GGCATCCTCTTTAACCACGAGAGCCCGCGACGCGGACCGACGTTTGTGACGCGCAAGATT 3026 Query 24945 AC 24946 || Sbjct 3025 AC 3024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570230392579760