Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1222 129 1e-24 seq1237 127 5e-24 seq5578 125 2e-23 seq4638 104 6e-17 seq7385 102 2e-16 seq5297 100 7e-16 >seq1222 Length=6011 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | | || | || || Sbjct 2194 AGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 2135 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || || || || || || || |||||||| Sbjct 2134 TCGAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCC 2075 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || ||| |||| || | || ||||| | |||||||||| Sbjct 2074 TGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTC 2015 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 ||||| |||| ||| || | ||| | |||| Sbjct 2014 TTGCCGGTCAGAGTCTTGACGAAGATCTGCA 1984 >seq1237 Length=5901 Score = 127 bits (140), Expect = 5e-24 Identities = 101/119 (85%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAG-CAG-AAACATCA 4527 |||||||||||||||||||||||| || || |||||||| ||||| | ||| |||| ||| Sbjct 5343 GAATATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATATGCCAGAAAACGTCA 5284 Query 4528 CCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 || ||||| ||||| | ||||||||| ||||||| ||| |||||||| | |||||||| Sbjct 5283 CCAGCTTGAGTTTCAATAACAGGTAAAGCTGTTAATGAACCACCACCTATTTTTTTATT 5225 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| |||||||||| | |||| |||||||||||||||||||| ||||||||| || Sbjct 5024 GCTCCATATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGAAAACATGCTGTA 5083 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 5084 ATTTTTTATGATGATTTATCTAAACAA 5110 >seq5578 Length=838 Score = 125 bits (138), Expect = 2e-23 Identities = 131/171 (77%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTT-CTTTTTTGTTATGCCGGT 7616 || || ||| || |||| || ||||| || | |||||||| ||| | |||||||| | Sbjct 834 TATAATGTTGTTGTTACTGCACATGCTTTCTTAATGATTTTTCTTCATGGTTATGCCTAT 775 Query 7617 TATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 | | || || ||||| || || || || || ||||||||||| |||||||| |||||||| Sbjct 774 TTTAATTGGAGGTTTTGGTAACTGGTTTGTACCTTTAATGATAGGTGCTCCAGATATGGC 715 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||||| || | || ||||| |||||||| ||| |||| || || ||||| Sbjct 714 GTTTCCTAGAATGAATAATATTAGTTTTTGGTTATTACCACCATCATTATT 664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 7/183 (4%) Strand=Plus/Plus Query 371365 aaTGGTAATTTATGCATAGAT-AAACCAGGTACTCTCATATTAAATATCGTAGTAATAAA 371423 ||||||||| |||| | | | |||||||| ||||||| ||| | || || | || ||| Sbjct 444 AATGGTAATCTATGAAAACTTTAAACCAGGAGCTCTCATGTTATAAATGGTTGAAAGAAA 503 Query 371424 GTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATC 371483 || ||||| |||| | ||| || ||||||| | |||||||||||| || |||||||| Sbjct 504 ATTAATAGCACCTAATAAAGATGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATC 563 Query 371484 GACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCC 371540 || ||| || || || || |||| | || ||| || |||||||| || || || Sbjct 564 TACTGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGGTAAACAGTCCAACC 620 Query 371541 GGT 371543 || Sbjct 621 TGT 623 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || |||||||| |||||||||||||| || | | ||||| ||||| || || Sbjct 266 TTCAGGGTGTCCAAAAAACCAGAATAAATGTTGGTATAATACTGGATCACCTCCACCAGA 325 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| | || |||||| ||||||||||||||||| |||| Sbjct 326 AGGATCATAGAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 369 >seq4638 Length=1116 Score = 104 bits (114), Expect = 6e-17 Identities = 89/106 (84%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 1000 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACCTTTTTTAAAGGCAG 1059 Query 6826 CAG-TGGAGAATATTTGACAATGGGCGAAAG-CTTGATCGAGTAAT 6869 ||| ||| |||| || ||||||| ||||||| ||||||| || ||| Sbjct 1060 CAGTTGGGGAATTTTGGACAATGAGCGAAAGCCTTGATCCAGCAAT 1105 >seq7385 Length=553 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 397 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 456 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 457 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 516 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 517 AACGCGTTAGCTTGAT--ATCTAAAAA 541 >seq5297 Length=911 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 7591 ATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCT 7650 ||||||||||| | |||||||| || | || || ||||| | || || || || ||| Sbjct 35 ATGATTTTCTTCATGGTTATGCCAATTTTAATTGGAGGTTTTGTTAACTGGTTTGTACCT 94 Query 7651 TTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTA 7710 |||||||| |||||||| |||||||| ||||| || | | ||||| |||||||| ||| Sbjct 95 TTAATGATAGGTGCTCCAGATATGGCGTTTCCTAGAATGACTAATATTAGTTTTTGGTTA 154 Query 7711 CTACC 7715 |||| Sbjct 155 TTACC 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192359720348762