Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq18 156 3e-33 seq12 87.8 1e-12 >seq18 Length=101766 Score = 156 bits (172), Expect = 3e-33 Identities = 398/605 (66%), Gaps = 18/605 (3%) Strand=Plus/Plus Query 29636 AGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGG 29695 ||||| | | | || || || || ||||| ||||||| ||| || || || | |||||| Sbjct 82237 AGCTGCACCTTGAGGGGCTCGACATGGTCCAGGTAGATGTGCGCGTCACCAATCGTGTGG 82296 Query 29696 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29755 | ||||| || | ||||| ||||| || || | | ||| | || | |||| Sbjct 82297 ATGAACTCGCCAGCACGCAGCCCTGTGACCTGCGCGACGAGTCGCGTCAACAGCGCGTAG 82356 Query 29756 CTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCAC 29815 || |||||||| || ||||| ||||| ||||| || |||| | ||||| | ||| || Sbjct 82357 CTCGCGATGTTGAATGGCACGCCGAGACCCATATCTGCTGAGCGTTGGTACATCTGACAG 82416 Query 29816 GAGAGCTCTCCGT-CGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGC 29871 |||||||| || | ||| ||||||||||| | ||||| |||||||| || || || Sbjct 82417 GAGAGCTCACCATTCGCA-ACGTAAAACTGGCAGAACATG---TGGCACGGCGGCAGAGC 82472 Query 29872 CATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT 29931 ||| | ||| |||||||| || ||| ||||||||||| || | ||||| Sbjct 82473 CATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGCCGATCGTTCGGGTT 82532 Query 29932 GTTCCTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT 29987 || ||| | || ||| | || ||||| || || ||| || ||||||| Sbjct 82533 CGTCTTGAGTTTTTGGATCAC----CTCCGCGAGCTGGTCGACTCCCTGGCCAGAGTAGT 82588 Query 29988 CTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30047 | | | || || | ||||||||| || ||||| |||| Sbjct 82589 CGGCGTGCATCGTCGTGTACTTGGCTCCAAAGTGGCGCCACTGGAAGCCATACACTGGTC 82648 Query 30048 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30107 | || || || |||| | || ||| ||| | | || | | || | || || | Sbjct 82649 CAAGATCGCCAGCTTCGCGATGTCCGAGGCCGATGCTCTCTAGGTATTCCTTCGATCCAT 82708 Query 30108 TGGCGTCCCAGATCTTTACCCCCTTCT-CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30166 || | ||||||||||| | ||||| | | | | || |||| || || || ||| Sbjct 82709 TGCCATCCCAGATCTTGATACCCTTGTCCTGCAATGTC-TTGGCATTGGTATCGCCACTG 82767 Query 30167 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGG 30226 | ||||||||||||||||||| |||| | ||| ||||| | |||||||||||| || Sbjct 82768 ATGAACCACAGCAGCTCCTCCGCGACACCGCGCCAGAAGACGCGCTTGGTCGTGAGCAGC 82827 Query 30227 GGAAA 30231 ||||| Sbjct 82828 GGAAA 82832 >seq12 Length=134298 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 53525 CCAGAGATGGGCGACAAGTTT-GCATCCTTCACGGCGCAAAAGGGGACATGCGGAGCGGT 53583 || ||||| ||||||||||| ||| | |||||| || ||||| ||||| || | Sbjct 51430 CCCGAGATCGGCGACAAGTTCAGCAGTCGCCACGGC-CAGAAGGGCGTGTGCGGCACGAT 51488 Query 53584 CCTGACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAA 53643 || | |||||||||||||| ||| || | ||||| || |||||||||||||| || Sbjct 51489 CCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGTCTGCCCCGACCTCATCATGAA 51548 Query 53644 CCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||| |||| ||| || | | |||||||| Sbjct 51549 CCCGCACGGCTTCCCGAGCCGCATGACGGT 51578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406107644870578