Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950835.1_202016-12-27] 11,223 sequences; 35,561,321 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1222 170 4e-37 seq72 113 9e-20 seq1467 104 5e-17 seq1131 87.8 4e-12 >seq1222 Length=6011 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 2210 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 2151 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || || || ||||||| || || || || || Sbjct 2150 AAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGATCCGGAGG 2091 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||||| || | || || ||||||||| |||| Sbjct 2090 GATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGA 2032 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 | ||||| ||||||||||| || |||| |||||| ||||| ||||||| Sbjct 2031 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCA 1984 >seq72 Length=48362 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 24116 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAGG 24175 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| ||||||||||| |||||||| || ||||| || | |||||| || ||| Sbjct 24176 TGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 24235 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || || || || Sbjct 24236 TTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATAAGCGTCGAC 24295 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGA 316388 || || || ||||| || | |||| | || | ||| |||||| Sbjct 24296 TTACCGGCACCGTTGGGGCCGATGACAGCAATACGCGAGGCGAGCGA 24342 Score = 111 bits (122), Expect = 3e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 ||||| ||||| || | | || ||||| ||||| ||| ||||| || || | ||| Sbjct 24931 GAGGTTGTGCTCGACGAAGACCGTCTTCAGCTCATCCTGCGTAGGGAAGCCCTCGAGCTG 24990 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACC 317105 |||||| || || | ||| || ||||||||||| ||| || |||||||| ||||| Sbjct 24991 GCCGTTCGAGATGGCGCGCATAAGCGTCGACTTGCCGCAACCGTTCGGGCCGCACAGACC 25050 Query 317106 ATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATA 317165 || || | || ||| || || |||| ||||||||| |||||| ||||||| || Sbjct 25051 GTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATACCACCGTA 25110 Query 317166 TGCCAGAGAGAACTCACAATCACACAGGTCC 317196 || || |||||||| || | || || ||| Sbjct 25111 GGCGAGCGAGAACTCGCAGTTGCAGAGATCC 25141 >seq1467 Length=5004 Score = 104 bits (114), Expect = 5e-17 Identities = 193/282 (68%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| ||||| | | |||||| ||||||||| || ||||||| || |||||||| Sbjct 3985 CGTGAAGATGTAGCGCGGACTCGCGGCGTCCTTGCCTCCCTGCAGCCGCGTGCCAAACTG 4044 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||| || ||| | ||||||| |||||||| ||||| ||||| || || Sbjct 4045 TCCCGATGGATAGAGCAGCGGCAGGTTGTTGGCGCCGACGTAGTCCTGCGCCATGTTGAC 4104 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACC 273958 ||| ||| || || || ||||||||||||| || || |||| || | || || Sbjct 4105 GATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTCACTGCAGTAGCC 4164 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTT---GAATGCGGAATACAA 274015 | || ||| || ||||| || || |||||| || ||||| | | ||| | | Sbjct 4165 AGCGAGCTGCGCGACCTTGACTTCCTTCGTCAGCTTGCGCTTCAGGCACGCG---AAGAG 4221 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||||| ||||||||| ||| | || || || || || || Sbjct 4222 CACCTTGCGCTGCGAGACCTTCAGGCCGTCGACCACGGACGG 4263 >seq1131 Length=6517 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 6416 ACCACCACGCAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 6475 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972 ||||||||||| ||||| || || || || || ||||||| Sbjct 6476 GAGCGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCA 6516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046588684463842