Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2345 188 2e-42 seq7871 122 2e-22 seq44924 86.0 1e-11 >seq2345 Length=2372 Score = 188 bits (208), Expect = 2e-42 Identities = 688/1058 (65%), Gaps = 53/1058 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 1410 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTGATGTCGAG 1351 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| ||||||||||| || ||||| || ||||| || | |||||| || || Sbjct 1350 GTGCTCCTCAATGTGGTGGAACGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 1291 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| ||||| || Sbjct 1290 CTTCCACACCGTACCGACCGTAGGCTCAACCTCACCCGTAAGCATCTTGATGAGCGTCGA 1231 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCA-T 319228 || || |||||||| ||| | ||| | || | ||| ||||| ||| Sbjct 1230 CTTACCGGCACCGTTGGGGCCGATGACAGCAATACGCGAGGCGAGCGA-------GCACG 1178 Query 319229 TCACGT---TGTCAAAGAT---TAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 |||||| ||||| ||| | || || || || |||| | | | || | Sbjct 1177 TCACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTA-CGAGCAGTTC 1119 Query 319283 GT-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCG 319338 || || ||||| ||| || |||| ||||| | | ||||| || ||||| Sbjct 1118 GTCAGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCGGCAAGGAAACCAGGCTCA 1062 Query 319339 GGGAACTTCCACGTG--GTCTTC-GTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||||| | || || | | | | ||| ||| ||||||| || | || || Sbjct 1061 GGGAACGTGAACTTGAAGGCAGCAGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGC 1005 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || ||| |||||||| || || || ||||||||| |||||||||| |||| ||| Sbjct 1004 TTCTGCTTGACGAACTCAGAGAGGTTACCCTTGTACGTCTTCAGCTTGCGGTT---CTCG 948 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||||| || | ||||||||| || |||||||| |||||||| | Sbjct 947 TAGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACAATGAGC 888 Query 319516 CACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAA 319575 ||| |||| | | ||| | | ||||| || | |||| | ||||| |||| Sbjct 887 GACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCC 828 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | ||||| |||||||| || ||||| || | | || |||| |||||| ||||| || Sbjct 827 AAGTGGTTCGTCGGCTCATCGAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCC 768 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 | | || ||||| ||||| || || | |||| | |||| |||| || Sbjct 767 AACTCAAGCTTCATCTTCCAACCACCCG--AGAGGGCACCGACAGGCA---TGGC-CTGC 714 Query 319696 ATATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAA 319747 || || ||||| || || ||| | || || || || ||||| | | | Sbjct 713 ATCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---A 659 Query 319748 TGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGG 319807 ||| ||| | || ||| | |||||||| |||| | | || || Sbjct 658 GGTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCGATGACCGGAAGCTCAGCCTCCT 602 Query 319808 ACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTT 319867 | | ||| | ||| || ||| | | || || | ||||| | ||||| || | Sbjct 601 CAGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGCGTAGGGAAGCCCT 542 Query 319868 CAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCAC 319927 | |||||||||||| || |||||||| || || || ||||| ||||| || || | Sbjct 541 CGAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGC 482 Query 319928 ACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTC 319987 ||||||||||||||| || || || ||| | || | ||||||||| ||||| | | Sbjct 481 ACAGACCGTAGCGGTGGCCACGCTTGAGGCGAAGGCGGGCGTTGTTCAGCAGAATCATAC 422 Query 319988 CACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 |||| || || || || || || || | || |||||| Sbjct 421 CACCGTAGGCGAGCGAGAACTCGCAGTTGCAGAGATCC 384 >seq7871 Length=1281 Score = 122 bits (134), Expect = 2e-22 Identities = 553/863 (64%), Gaps = 24/863 (3%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||| ||||| | ||| ||||| | |||||||||||||| | ||| | |||||| Sbjct 356 TTCCCGATCCAGGAGAACGAGGTGTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGG 415 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATGA 229877 ||| | ||||| | ||| ||| ||| || |||||| | || |||| || Sbjct 416 ACCGCCGAGGAGATCGATCTCGT-GCATGACCTCAAGGACTGGGGC---AACCTCACGGA 471 Query 229878 CGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 229937 | |||| || || || ||||| ||| |||| | |||||||| | ||| ||||| || Sbjct 472 CAACGAGCGCCACTTTATCAAGCACGTCCTCGCGTTTTTCGCGGCGAGCGACGGTATCGT 531 Query 229938 GATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATT 229997 | || || || || ||||| || || || ||| || ||||| || || Sbjct 532 CAACGAGAACCTCGCGATGAACTTCAGCAGCGAGGTGCAGGTCCCTGAGGCGCGTTGCTT 591 Query 229998 TTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTA 230053 |||| | ||| | |||| | ||| ||||| || || || | ||||| | Sbjct 592 CTATGGATTCCAGATCGCCATTGA--GAAC--ATCCACTCGGAGGTGTACTCGCTGCTCA 647 Query 230054 TCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAACA 230113 | ||| || || ||| || || |||| | ||| | ||||| || | || Sbjct 648 TTGACACGTACATCAAGGACCAGACTGAGAAGAACCACCTTCTCCGCGCCATCGAGACCA 707 Query 230114 TCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCG- 230172 ||||| || || || ||||| | ||||| | || ||| || | | || Sbjct 708 TCCCGTGCGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCGG 767 Query 230173 --TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 ||||| ||||| |||| || | | ||| || ||||| | || || || | Sbjct 768 CTTTTGCTGAGCGCATCGTTGCGTTCGCTGCTGTCGAGGGTATCTTCTTCTCGGGCTCGT 827 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| ||||||| ||||| ||| ||| | |||||||||||| | | || |||| Sbjct 828 TCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACG 887 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTCAAAG 230349 || ||||| ||||| ||||| ||||| | ||| ||| | || |||| || ||| Sbjct 888 AGCTCATCTCGCGCGATGAGGGCCTCCACTGCGACTTC-GCGTGTCTGCTGTACTCGAAG 946 Query 230350 CTCCAGAACAAGCTACC--ATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 || |||||||| || | ||| | || | | |||||| || || || | | Sbjct 947 CTTGTCAACAAGCTCCCGGAGTCGCG--CATCCACGAGATCATTCGCGATGCTGTCGCTA 1004 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG-CCTTATTGGCATGAACGCTGAA 230466 || ||||||||| | ||| | |||| |||| || || ||||||||| | Sbjct 1005 TTGAGAAGGAGTTCGTCCAGGACTCGCTTCC-GGTCGAGCTCATCGGCATGAACTCGTCG 1063 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | |||||||| || ||| ||||| ||| | | || |||||| || Sbjct 1064 CTCATGTGCCAGTACATTGAGTTCTGTGCCGATCGCCTCCTCCACGCGCTTGGTGTCGCC 1123 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || | ||||| |||||| || | | ||||| | || ||||| || || ||| Sbjct 1124 AAGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAG 1183 Query 230587 ACCAACTTCTTCGAAAAGCGTGT 230609 |||||||||||||| ||||| || Sbjct 1184 ACCAACTTCTTCGAGAAGCGCGT 1206 >seq44924 Length=395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 339 GCCCGTTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057002638671260