Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950855.1_202016-12-27] 60,602 sequences; 48,855,945 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7871 342 5e-89 seq43746 95.1 1e-14 seq36561 87.8 2e-12 >seq7871 Length=1281 Score = 342 bits (378), Expect = 5e-89 Identities = 602/864 (70%), Gaps = 20/864 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || ||||||||| ||| |||||| | ||||| || || | || Sbjct 317 GAGCCGTTCCTCATCGAGAACCCGAACCGTTTCGTGCTCTTCCCGATCCAGGAGAACGAG 376 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 |||||| |||||||| ||||| |||||| |||||||||| ||||||| | || || Sbjct 377 GTGTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACCGCCGAGGAGATCGATCTC 436 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || ||||||| | | | |||||||||||||| || |||||||| Sbjct 437 GTGCATGACCTCAAG-GACTGGGGCAACCTCACGGACAACGAGCGCCACTTTATCAAGCA 495 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTT 116813 ||| || || |||||||| || |||||||| |||||||||||||| || | ||| | | Sbjct 496 CGTCCTCGCGTTTTTCGCGGCGAGCGACGGTATCGTCAACGAGAACCTCG-CGATGAACT 554 Query 116814 TCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || ||| ||||||||||| | |||||||| |||||||| || || ||||||||||| Sbjct 555 TCAG-CAGCGAGGTGCAGGTCCCTGAGGCGCGTTGCTTCTATGGATTCCAGATCGCCATT 613 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||| |||| ||| ||||| ||||||||| | | | | Sbjct 614 GAGAACATCCACTCGGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACCAGACT 673 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| |||| | || | | |||||||||||| || |||||||| | ||||||| Sbjct 674 GAGAAGAACCACC---TTCTCCGCGCCATCGAGACCATCCCGTGCGTGCAGAAGAAGGCG 730 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 | |||||||| ||| || | | || || || | |||||| | || || Sbjct 731 CACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCGGCTTTTGCTGAGCGCATCGTTGCG 790 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| || |||||||| ||||||| |||||| ||| | |||| || ||||||||| Sbjct 791 TTCGCTGCTGTCGAGGGTATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAG 850 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||| ||||| | ||| |||||||||||||| | || ||||| Sbjct 851 AAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGCGATGAGGGC 910 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTC---AAGCATTTGGTGCAGCGACCGAGCGCG 117226 || || |||||||| || ||| |||||| | |||| | | ||| ||| | | Sbjct 911 CTCCACTGCGACTTCGCGTGTCTGCTGTACTCGAAGCTTGTCAACAAGCTCCCG---GAG 967 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 ||||| || |||||| | ||| || ||||| || ||| || ||| || || Sbjct 968 TCGCGCATCCACGAGATCATTCGCGATGCTGTCGCTATTGAGAAGGAGTTCGTCCAGGAC 1027 Query 117287 GCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345 |||| ||||| || | || | || | || | |||| || ||||| ||||| Sbjct 1028 TCGCTTCCGGTCGAGCTCATCGGCATGAACT-CGTCGCTCATGTGCCAGTACATTGAGTT 1086 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 | ||||| | || || | || ||| | | ||||||| |||||| | | ||||| Sbjct 1087 CTGTGCCGATCGCCTCCTCCACGCGCTTGGTGTCGCCAAGATCTACAAGGTGTCGAACCC 1146 Query 117406 GCTGGACTTTATGAACCTCATCTC 117429 | | |||| ||| || | ||||| Sbjct 1147 GTTCGACTGGATGGACATGATCTC 1170 >seq43746 Length=404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| || || |||| ||| ||||| ||||| || |||| |||||||| ||| Sbjct 404 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGAC 345 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||||| | |||||||| || ||| | ||| || | || || ||| Sbjct 344 TACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGTGGTGGTGGC 288 >seq36561 Length=468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||| Sbjct 468 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGAC 409 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| | ||||| || || ||| | ||| || | || || Sbjct 408 TACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTGCGTGGTGG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514828908575520